BAC Information

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BAC

Clone NameMSMg01-166B13
Chromosome1 (Build37)
Map Location 179,100,973 - 179,199,734
singlet/doubletdoublet
Overlap geneAkt3
Upstream genePld5, Cep170, Sdccag8, LOC666235
Downstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166B13.T7 (MSMg01no166_b13.b1)MSMg01-166B13.TJ (MSMg01no166_b13.g1)
ACCAG364029AG364030
length745752
length of high quality
(start - end)		321 (47 - 367)340 (77 - 416)
definitionCHROMAT_FILE: MSMg01no166_b13.b1 PHD_FILE: MSMg01no166_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:29 2005CHROMAT_FILE: MSMg01no166_b13.g1 PHD_FILE: MSMg01no166_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,100,973 - 179,101,289)(179,199,396 - 179,199,734)
sequence
CGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAGGCAAACTAGTCAGCAATACTGGAAGCTAAAGGAAACAGGC
TTTTTTTCTATGTATAGAAACTGTCCTCTCTACTAACACTGCCATTTCAG
AATTTCTGAGGTCTGACAGTGCAATCAGGGTGTTTTTCAGAAAACAGAAA
ACCACACTTAAACTTGTAGAAAGTCAAGTAAGTTAGGAACCATCAGCCTG
AAACTTTAATGGGAGCAAGACAGCTGCCTGAATGGATGGGTGTGGTCAGA
GTGAGAAAGGAAGCAAGTTTTCACTAGGAATTAAGTTGAATTATCCAACA
AGTTTGATAGCTCTCGATATTTGGAATTACCAAATATGTCAAATATGTTT
TTGAATAACAATCTCACACCCCACCAAATAAATATGAAACATTATTATTA
ACGGTGACTTTACAGAGTTGCTAGATATCTCACGCTGGTTCATTAAAAAG
CATAAAAGGGGCTTATAATGAAATAAATGTAAGTTCAAATGAATTAAAGA
ATAAATACCAATAAGAAGACAATCACTACTCTCAACAACTATATGATGCC
ACAGCTATTGTTCTGTGCATTTGCCAATCAATATTGTTATGGAGGCCTAT
TAAGACTCCAGTGTACCAGACTGTAGCTAATTATGTATATTTCAGTGATT
AACTAGTACTTGTTGCCTCCTTCACACCACCTCCCAAAATGATTT

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTGTCTCAGTTGGGCTTAAC
ACGCACAAACCTCAACACACCCAGCATAATCTTCTTTGTAGTTTTAGCCT
TTTTCTTCCAGAAAATAGGCTTAGACTGCCCACCAAAGCCACTGTGTTTC
CTGTCCCAAGCTTGCCTCCCCTGGGGAGACGGGGCATCCTTGCCCTTTGT
GTACTGTGTCATTTCATCAGGCTGGTACTTGCCATACTTCTTGCAGAAAA
CCCAGCATTCTTTAGGAATGTTCTCCATAATGGCAGAAGAATATCACCTC
AGAAATAGAGAGGGAGAGCCAAAAACAGAAACACTGATAATCTTCTTTTT
AATAGGAATTAAAATCCCCCCCCCTCAACAGAGTTTTCAAGATATAAAAG
GGACTATTTTTCAAACAACCCTATTATGAAGAAAAATAGGATTTAGATAC
ATTTTTTTATTGTATGGATATAAAATAATGGAGAAAATGCCAAATAAAAG
AGACTAGCAAGGAAGGTTGGGTCCACCACACACTGTGGGAAGGAATTGGA
GGATGCTTGTGCAGCTCATGCCAGTGGTTTTCCACAGCATCTGTGTCAAT
GCCCAAGATATGTTTCCCAAAATGATGGGCCTCTGTGGTATGTCTCTCAT
CCTATCTTATTAACCCATCTATATTTTTTTCTTATCGTCCCTCTTCACCC
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_b13.b1 MSMg01no166_b13.b1 CHROMAT_FILE:
MSMg01no166_b13.b1 PHD_FILE: MSMg01no166_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:29 2005
         (321 letters)



>mm_chr1_179100769_179101489
          Length = 721

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaggcaaactagtcagcaatactggaagctaaaggaaacaggctttttttcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaggcaaactagtcagcaatactggaagctaaaggaaacaggctttttttcta 264

                                                                       
Query: 65  tgtatagaaactgtcctctctactaacactgccatttcagaatttctgaggtctgacagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtatagaaactgtcctctctactaacactgccatttcagaatttctgaggtctgacagt 324

                                                                       
Query: 125 gcaatcagggtgtttttcagaaaacagaaaaccacacttaaacttgtagaaagtcaagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaatcagggtgtttttcagaaaacagaaaaccacacttaaacttgtagaaagtcaagta 384

                                                                       
Query: 185 agttaggaaccatcagcctgaaactttaatgggagcaagacagctgcctgaatggatggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agttaggaaccatcagcctgaaactttaatgggagcaagacagctgcctgaatggatggg 444

                                                                       
Query: 245 tgtggtcagagtgagaaaggaagcaagttttcactaggaattaagttgaattatccaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtggtcagagtgagaaaggaagcaagttttcactaggaattaagttgaattatccaaca 504

                            
Query: 305 agtttgatagctctcga 321
           |||||||||||||||||
Sbjct: 505 agtttgatagctctcga 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_b13.g1 MSMg01no166_b13.g1 CHROMAT_FILE:
MSMg01no166_b13.g1 PHD_FILE: MSMg01no166_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:30 2005
         (340 letters)



>mm_chr1_179199196_179199935
          Length = 740

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgtgtctcagttgggcttaacacgcacaaacctcaacacacccagcataatcttctt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcttgtgtctcatttgggcttaacacgcacaaacctcaacacacccagcataatcttctt 480

                                                                       
Query: 61  tgtagttttagcctttttcttccagaaaataggcttagactgcccaccaaagccactgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgtagttttagcctttttcttccagaaaataggcttagactgcccaccaaagccactgtg 420

                                                                       
Query: 121 tttcctgtcccaagcttgcctcccctggggagacggggcatccttgccctttgtgtactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tttcctgtcccaagcttgcctcccctggggagacggggcatccttgccctttgtgtactg 360

                                                                       
Query: 181 tgtcatttcatcaggctggtacttgccatacttcttgcagaaaacccagcattctttagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgtcatttcatcaggctggtacttgccatacttcttgcagaaaacccagcattctttagg 300

                                                                       
Query: 241 aatgttctccataatggcagaagaatatcacctcagaaatagagagggagagccaaaaac 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aatgttctccatattggcagaagaatatcacctcagaaatagagagggagagccaaaaac 240

                                                  
Query: 301 agaaacactgataatcttctttttaataggaattaaaat 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 agaaacactgataatcttctttttaataggaattaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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