NGATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTGTTTTTAATAGCTGAGTAGTACATTTTCTGTATCCA
TTCCTCTGATGAGGGACATCTGCATTCTTTCCAGCGTCTGGGTATTATAA
ATTAGGCTGCTATGAAGATAGTGGAGCATGTTTCCTTATGACATGTTGGA
GCATCTTCTGGGTATATGCCCAGGAGTGGTATAGCTGGGTCTTCAGATTT
CCAGAGTGGTTGTACAAGCTTGCAATCCCAAAAGAAGTGGAGAAGGGTTC
CCCTTTCTTCAAATCCTAATCAGCGTCTGCTGTCACCTGAGATTTTGATC
TTAGCTATTCTGATTGTTATGACCCCCCCCTCAAGGTTGCTTTGATTTGC
ATTTCCTGATGACTACCCACGCTGAACATTTTTTTTTTTTAGGTGCTTCC
CAGCCCTTTGGTATTCCTCAGTTTAGAATTCTTTGTTTAACTCTATACCC
CACTTTTAATTGGGTTATTTGTTTCTCTGGAATCTAACTTCCTGATTTCT
TTGTATATATTAGATATCCGCCCTTTATTGGATATAGAATTGGCAAAGAT
CTTTTCCTAATCTGTTGGCTGCCATTTTGTCTCTATTGATAGCATTCGCC
CTATAGAAGACTCGCCATTTTATGAGCCCCCCTTCTGCCCATTCTTGATC
CTCAAAAATTACGCTTCGGCTTTTTTGTTTAGGTCATACCCA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATATTGAAACAAAGTTTCATGACA
GAGATACAGAGGGAAACATTTTGGCTCAGTGAACTGCCCACCTTCCTGAA
CAGACTCATCAGACAAGAACTTTCTAACATTATAGAAAAACAAAGGACAG
ACTGCCTTTGTTTAAGCAAGGTGCAGCACAATATTTTAAGACTCAAAGAA
AAGGGACAGTGGTCTTATAGTAAATATAGAAGAAATATAGAGGAAGGAAA
GGGGTCAGAGAAAGTCAAGTTTGACATAACAGTTAGTAGTAAATATCTTT
TCTTCTATAAATTCTGTGCCAAACTAAAATAGAATACATTTAAATATTTC
TAATATTTCTGTAACTGCAAGGCTTTACAACACCAATATTAAGTCAGAAG
ATATTGAGGTAAAATAGAATTGATTTTATCATAATGTTAATTTTAGTTTT
CATGAAATTTTTGTTTCCTTATTTAGTTCTTTCAATATTCTTATTTAATC
AAGGAACACATTAGAAGAAAATGTATTTTGAAGATATGAGTAAACAATGA
ATGAAGTTTCTGAGGAAATATTTTTTGTACAAATAAAGACTTGAGACACA
GGTTGTCAGAGTAGGTCAAGCCATACCAAGATGTGCTTCTTGTCTGTCTA
GTCTCTCATGAAATG

Query= MSMg01no166_c06.g1 MSMg01no166_c06.g1 CHROMAT_FILE:
MSMg01no166_c06.g1 PHD_FILE: MSMg01no166_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:33 2005
         (636 letters)



>mm_chr1_50229374_50230411
          Length = 1038

 Score = 1073 bits (555), Expect = 0.0
 Identities = 618/639 (96%), Gaps = 4/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgaaacaaagtttcatgacagagatacagagggaaacattttggctcagtgaactg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 atattgaaacaaagtttcatgacagagatacagagcgaaacattttggctcagtgaactg 260

                                                                       
Query: 61  cccaccttcctgaacagactcatcagacaagaactttctaacattatagaaaaacaaagg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 cccaccttcctgaacagactcatcagacaagaactttctaatattatagaaaaacaaagg 320

                                                                       
Query: 121 acagactgcctttgtttaagcaaggtgcagcacaatattttaagactcaaagaaaaggga 180
           |||||||||||||||||||| |||| |||||||||||||||||||||||| |||| ||||
Sbjct: 321 acagactgcctttgtttaagaaaggagcagcacaatattttaagactcaaggaaagggga 380

                                                                       
Query: 181 cagtggtcttatagtaaatatagaagaaatatagaggaaggaaaggggtcaga-gaaagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 381 cagtggtcttatagtaaatatagaagaaatatagaggaaggaaaggggtcagatgaa-gt 439

                                                                       
Query: 240 caagtttgacataacagttagtagtaaatatcttttcttctataaattctgtgccaaact 299
           ||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||
Sbjct: 440 caagtttgatataacagttagtagtaaatatcaattcttctataaattctgtgcaaaact 499

                                                                       
Query: 300 aaaatagaatacatttaaatatttctaatatttctgtaactgcaa-ggctttacaacacc 358
            |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 gaaatagaatacaattaaatatttctaatatttctgtaactgcaaaggctttacaacacc 559

                                                                       
Query: 359 aatattaagtcagaagatattgaggtaaaatagaattgattttatcataatgttaatttt 418
           |||||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||
Sbjct: 560 aatattaagtcagaagatattgaggtaaaacaaaattgatcttatcataatgttagtttt 619

                                                                       
Query: 419 -agttttcatgaaatttttgtttccttatttagttctttcaatattcttatttaatcaag 477
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagttttcatgaaatttttgtttccttatttagttctttcaatattcttatttaatcaag 679

                                                                       
Query: 478 gaacacattagaagaaaatgtattttgaagatatgagtaaacaatgaatgaagtttctga 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaacacattagaagaaaatgtattttgaagatatgagtaaacaatgaatgaagtttctga 739

                                                                       
Query: 538 ggaaatattttttgtacaaataaagacttgagacacaggttgtcagagtaggtcaagcca 597
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggaaataatttttgtacaaataaagacttgagacacaggttgtcagagtaggtcaagcca 799

                                                  
Query: 598 taccaagatgtgcttcttgtctgtctagtctctcatgaa 636
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taccaagatgtgcttcttgtctgtctagtctctcatgaa 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1038
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1028
Effective search space:   643528
Effective search space used:   643528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)