TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNGATGCGCGGN
ANNCAGCTGNGATTTACTANCACGAAGGGCNAAAAGAANAGNAAGNATCA
GAAAGCAGAAGNTGCAAAATCATGCCAAAAAATCAAAATGCATAAAACCT
CATGTATTGCTTGTTTTAATCCTTCTTAAAATGTAAGAGCAGGGGTTGGT
GAGATGGCTCAGCATTGGCTTGTCTTTCAGAGAACCTGGCTTTCTAGCAC
CAAAATATTGTTTCACACCCACCTTTAACTCCAGTTCCAGGGAATCTGAC
ATCTTCTTCTGGCCAGGCAAATTTTGTGATTTGCAACAAGACCTTTGCAC
ACATAAAAAAGGTAAATAACCCACCCCAAAAACAGACAATTCTTAAAAGT
TTTGAAAGGAGAGTTACAACAGACTAGTCTACCCAGGTGAGAGTGCAGAC
TACAGAAGCAACATGGTTTCTGGGACATAACCCATTTTGGGCTCCAGACT
TCTGGGCACCTTCCCCAACAGAGCAGATGTGTCCACCTGGAAGGTTTCTT
TCAGAGAATGTGAGGGAGCCATCTGGAGCCCGGCTCCCTCAGAGACCAAT
TTGCGCACTTAGTTTGCAATACTGCATACCCTACCCTTTTTCCGCGACAG
GCCCCCGTAACATATTTTTTTTTTTTTCCAGGAAGCATGTTTGCACTTTT
TGACCCCTGGCTTGTTTTCTCCGTCTTATTTACACG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTCAGATAAATAAAGACATAACTACTTCATCATTCAGAAATGCAA
CTTAAGGATATATGCCCAAAGCAACTGAAATCAGAACATTTCTCTTTTCT
TTTTTAACCAATACATAAAAAAAAACCATAAAATTTCTTCATGAGAATGA
GGCAGCATGTAAAGCCTTGTGTGTGTGTGTGTATACACATACATATACAT
ACATGTATATATTTATATATATGTTGCATGTTTAAATCAGCTAAACATAT
TTATGTCCTAAATACTTATTACTCTTCTATCATGAGAACATTCAATGCCC
TTGCTTCTAGCTTTTGAAGTACATTATGTTACCCAGTATCTACTGTGCAA
CAGTAACCAGGACTTCTAGCTTCTACTGAATGAACCACACTGGATCCGTT
TTGGCCAGTCTTTCTCCATACTTCCCTTACATACTTCATGAGCCTTTCAG
ATCCACAACTGTACTTTCTCAACTTCTAGGTGCCCATGGTTTAGAATCAC
ATATAAGTGAGATCAAGTGCAAGTTGTCCTTATTTCTGGCTCATTTAACT
CACTGGAGTGAGATCCAGTTCCATCCACCATGCCACATATGATGCTATTA
TTTAATGGGCAAACAGTACTTCACCTTGCTATAGCATTTTGTTCCTTACC
AGCC

Query= MSMg01no166_f02.g1 MSMg01no166_f02.g1 CHROMAT_FILE:
MSMg01no166_f02.g1 PHD_FILE: MSMg01no166_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:47 2005
         (593 letters)



>mm_chr1_80543723_80544717
          Length = 995

 Score = 1075 bits (556), Expect = 0.0
 Identities = 584/594 (98%), Gaps = 2/594 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagataaataaagacataactacttcatcattcagaaatgcaacttaaggatatatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctcagataaataaagacataactacttcatcattcagaaatgcaacttaagtatatatgc 260

                                                                       
Query: 61  ccaaagcaactgaaatcagaacatttctcttttcttttttaaccaatacataaaaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaagcaactgaaatcagaacatttctcttttcttttttaaccaatacataaaaaaaaa 320

                                                                       
Query: 121 ccataaaatttcttcatgagaatgaggcagcatgtaaagccttgtgtgtgtgtgtgt--a 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 321 ccataaaatttcttcatgagaatgaggcagcatgtaaagccttgtgtgtgtgtgtgtgta 380

                                                                       
Query: 179 tacacatacatatacatacatgtatatatttatatatatgttgcatgtttaaatcagcta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacacatacatatacatacatgtatatatttatatatatgttgcatgtttaaatcagcta 440

                                                                       
Query: 239 aacatatttatgtcctaaatacttattactcttctatcatgagaacattcaatgcccttg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacatatttatgtcctaaatacttattactcttctatcatgagaacattcaatgcccttg 500

                                                                       
Query: 299 cttctagcttttgaagtacattatgttacccagtatctactgtgcaacagtaaccaggac 358
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 501 cttctagcttttgaagtacattatgctacccagtatctactgtgcaacagtaaccaggcc 560

                                                                       
Query: 359 ttctagcttctactgaatgaaccacactggatccgttttggccagtctttctccatactt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctagcttctactgaatgaaccacactggatccgttttggccagtctttctccatactt 620

                                                                       
Query: 419 cccttacatacttcatgagcctttcagatccacaactgtactttctcaacttctaggtgc 478
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 621 cccttacatacttcatgagcctttcagaaccacaactgtactttctcagcttctaggtgc 680

                                                                       
Query: 479 ccatggtttagaatcacatataagtgagatcaagtgcaagttgtccttatttctggctca 538
           | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 ctatggtttagaatcacatataagtgagatcaagtgcaagttttccttatttctggctca 740

                                                                 
Query: 539 tttaactcactggagtgagatccagttccatccaccatgccacatatgatgcta 592
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 tttaactcactggagtgagatccagttccatccaccatgccacaaatgatgcta 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 995
Length adjustment: 10
Effective length of query: 583
Effective length of database: 985
Effective search space:   574255
Effective search space used:   574255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)