BAC Information

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BAC

Clone NameMSMg01-166F07
Chromosome1 (Build37)
Map Location 24,098,790 - 24,099,101
singlet/doubletsinglet
Overlap genenone
Upstream gene4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik
Downstream geneLOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166F07.T7 (MSMg01no166_f07.b1)MSMg01-166F07.TJ (MSMg01no166_f07.g1)
ACCAG364189AG364190
length748837
length of high quality
(start - end)
317 (49 - 365)130 (74 - 203)
definitionCHROMAT_FILE: MSMg01no166_f07.b1 PHD_FILE: MSMg01no166_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:48 2005CHROMAT_FILE: MSMg01no166_f07.g1 PHD_FILE: MSMg01no166_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCAGTACAACTTTTCTGCAGTCACAAGCCATGAGCTTCACA
GCCTTTTCAACAGTCGAGGGCAGACTCAGAGCTCATAGATTTAACCATGG
CCTCAGACATTATCAGAATCAGCTGACTTATCTGAGACTAAACGGTTTAC
CCTTGTAGTCCTGGCAAAACAATACAAAACTCAATAATCTGGAGGCCAAT
CAAACAGAAATCCGTTCTGCACCATTTCCTAAATCACCAGCAGATAATTC
AGCTAAGCAATCTACAAATCCCAATCTATACATGGAATGACTCTGATGCT
CAGTGAGAAATCCTTTTGGTAATTCCCCCNTCCANCCGCACAGCTAATAT
GCAGAGAAAAAAAATTTCTCACCCCCCCACCACAAAAAAAGATACTTTTT
TTTTTTTTTTTTGAGACAGGGCATCTCTGTGCATCTCTGAGTAGCTCTGG
TTGTCCTGGCTCCAACTCTGCAAACCAGGCTGTCCTCTAGATCACAAATC
CGCCTGCCTCTGCCTCCAAAGCGCTGGGATTAATGGATGGGCCACCTCCA
ATCATTCTAAGTTTATTTTTTTCCATTGAACCACTACCCTTCTGATTTTT
TTATATTATTATTTTTCAACCCCTACCACCTTGTTCTTCTCTATTTTTTT
TTTCTTATGCTCGCCACCCTTTAATCTTTTTTCTTTTCTTTTTTTATT
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGGGAAA
CCCTGTCTCGAAAAAAGAAAAAGAAAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGG
AGGTGTAGTTGTGGGTTATCGGTATNTTTTTGTTTTTTTGTCGTTTATTT
ATTGTTCTTTTTTAAATTTTTTTTTTTTTTTCTCTTTGTATGCCCGTCTC
ATTGTTTTTTTTTTTTTTTGTGAACCGTTTTTTTTTTTTTTTTTTTTATT
TTGTTTTCTTCTTTTTTTGTGTTTTTTTTTTTTTTTTTCTTTCTTGTTTA
TTTTTTTTTTTTTTAGTTTGTTTTTTTTTTTTTTTCGGCCTTTCCCCCCC
AAAAATATATTTGTAAGTTGTTTTGATTGCCTCTTTTTTTTGTTTTTCTC
CTCGTTTTGTTTTTTTTTTTTTTTTTTTTTTCTTCTCTCTTTCTTGTTTT
TTTTGTTTCAGAGTCACTTTTTCCCTCTTTTTTTTTTGTTGGAATATTAA
ATGTTTGTTTTTCTCTTTTTTTTGTTTTATCTTTGTTATATTGTTTGGTT
CTGTTTTTTGTTTTTTATTTTTTTTTTTACTTTTCTTTTTTTGTTTTATA
ATATTTTCTTTTATATCCTTTTTATTATATTTTTATTTCTATCTCGCCGT
TTCTTTTTTTTTTTTTTTGGTCTCTTTTTTTTTCGTTTTTTTCCCTTTCC
GTGTATTCTTTTTTGATTTGTTCAGTTTTTCTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_f07.b1 MSMg01no166_f07.b1 CHROMAT_FILE:
MSMg01no166_f07.b1 PHD_FILE: MSMg01no166_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:48 2005
         (317 letters)



>mm_chr1_24098587_24099303
          Length = 717

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccagtacaacttttctgcagtcacaagccatgagcttcacagccttttcaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 204 ggaattctccagtacaacttttctgcagtcacaagccatgagcttcatagccttttcaac 263

                                                                       
Query: 64  agtcgagggcagactcagagctcatagatttaaccatggcctcagacattatcagaatca 123
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtcgagggcaggctcagagctcatagatttaaccatggcctcagacattatcagaatca 323

                                                                       
Query: 124 gctgacttatctgagactaaacggtttacccttgtagtcctggcaaaacaatacaaaact 183
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctgatttatctgagaccaaacggtttacccttgtagtcctggcaaaacaatacaaaact 383

                                                                       
Query: 184 caataatctggaggccaatcaaacagaaatccgttctgcaccatttcctaaatcaccagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caataatctggaggccaatcaaacagaaatccgttctgcaccatttcctaaatcaccagc 443

                                                                       
Query: 244 agataattcagctaagcaatctacaaatcccaatctatacatggaatgactctgatgctc 303
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 agataattcagctaagcaatctacaaatcccaatctagacatggaatgactctgatgctc 503

                       
Query: 304 agtgagaaatcc 315
           ||||||||||||
Sbjct: 504 agtgagaaatcc 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)