NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTTTATCCATATTGGATAGCTAACAACATGCTGCTTCCTTG
AGCTTTTCTCACTCTGAAAAAAATGAACTGACCTGGATAGCAGACACACT
ACACTAGGATCTGAAGGGAGGAAATATACTTTTATGTGTCACAAATATTA
CAAAAATTGAGATTTACATAAATGCACACAGATAAGCTTCAGGGGTAAGC
TATGTCAGAAGATTCTGTAAGGAACAGTGTCTGGGGCACTGCCAAGGAAT
TTTGTGGGTTAGGTCTCCAGGTTCCTGATGGAACATATGTTGATCAGTAG
GACTTCTGGCCATCAAACAAAATTATACATGGTGTGTGGTCAAAGAGTTA
ATGAATCTAACTTTCCCCTCCCTAATCTTTCAATTCCTTTTTGGATAAGC
TTTATTGATCTTTACTAAGAAATTTTGAGTTCGCATCACACATAAAATAA
GTAAGCACTTTCCAATAAACACAACACTAACAATGATCATCTTCCACCCC
AGCTTCAACTTCATATTCATGCAAACTTTGGGGTATGCACAGTAATTTAT
GATTCAAATGTTCATATTTGTAACTTATCTGATGAACAATAATTGAGTAT
TAATTTATTTTACAGCTTTCGACCATGTGCACAAATATGTGTGCAACTGG
CTACCAGACGAAATAGCAATACCCTATACGCTTTGTGTTT

NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTA
AGAAGGACACATGCCCCACTATGTTCATAGCAGCATTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACATATTCACAAAGGAACTCACACAATATGTACTCACTGAA
AAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATT
TTCTAAACACATGAAACTCCAGAAAAATGGATTCCGAAGTGTGGGCACT

Query= MSMg01no166_m07.b1 MSMg01no166_m07.b1 CHROMAT_FILE:
MSMg01no166_m07.b1 PHD_FILE: MSMg01no166_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:22 2005
         (594 letters)



>mm_chr1_69915258_69916250
          Length = 993

 Score = 1079 bits (558), Expect = 0.0
 Identities = 582/590 (98%), Gaps = 1/590 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctttatccatattggatagctaacaacatgctgcttccttgagcttttctcac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaattctctttatctatattggatagctaacaacatgctgcttccttgagcttttctcac 734

                                                                       
Query: 65  tctgaaaaaaatgaactgacctggatagcagacacactacactaggatctgaagggagga 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 733 tctgaaaaaaatgaactgacctggatagcagacacactacattaggatctgaagggagga 674

                                                                       
Query: 125 aatatacttttatgtgtcacaaatattacaaaaattgagatttacataaatgcacacaga 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 673 aatatacttttatgtgtcacaaatattac-aaaattgagatttacataaatgcacacaga 615

                                                                       
Query: 185 taagcttcaggggtaagctatgtcagaagattctgtaaggaacagtgtctggggcactgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 taagcttcaggggtaagctatgtcagaagattctgtaaggaacagtgtctggggcactgc 555

                                                                       
Query: 245 caaggaattttgtgggttaggtctccaggttcctgatggaacatatgttgatcagtagga 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 caaggaattttgtgggtaaggtctccaggttcctgatggaacatatgttgatcagtagga 495

                                                                       
Query: 305 cttctggccatcaaacaaaattatacatggtgtgtggtcaaagagttaatgaatctaact 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 494 cttctggccatcaaacaaaattatagatggtgtgtggtcaaagagttaatgaatctaact 435

                                                                       
Query: 365 ttcccctccctaatctttcaattcctttttggataagctttattgatctttactaagaaa 424
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttcttctccctaatctttcaattcctttttggataagctttattgatctttactaagaaa 375

                                                                       
Query: 425 ttttgagttcgcatcacacataaaataagtaagcactttccaataaacacaacactaaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttttgagttcgcatcacacataaaataagtaagcactttccaataaacacaacactaaca 315

                                                                       
Query: 485 atgatcatcttccaccccagcttcaacttcatattcatgcaaactttggggtatgcacag 544
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 314 atgatcatcttccaccccagcttcaacttcatattcatgccaactttggggtatgcacag 255

                                                             
Query: 545 taatttatgattcaaatgttcatatttgtaacttatctgatgaacaataa 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taatttatgattcaaatgttcatatttgtaacttatctgatgaacaataa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 993
Length adjustment: 10
Effective length of query: 584
Effective length of database: 983
Effective search space:   574072
Effective search space used:   574072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)