BAC Information

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BAC

Clone NameMSMg01-166P16
Chromosome1 (Build37)
Map Location 163,571,907 - 163,572,322
singlet/doubletsinglet
Overlap genenone
Upstream geneRabgap1l, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650
Downstream geneLOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166P16.T7 (MSMg01no166_p16.b1)MSMg01-166P16.TJ (MSMg01no166_p16.g1)
ACCAG364631AG364632
length761746
length of high quality
(start - end)		371 (47 - 417)434 (77 - 510)
definitionCHROMAT_FILE: MSMg01no166_p16.b1 PHD_FILE: MSMg01no166_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:38 2005CHROMAT_FILE: MSMg01no166_p16.g1 PHD_FILE: MSMg01no166_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAACTCTTCCGCTGGGGAACAGGGTACCCGTAAGTATAGCTTT
ACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTAT
CAGAAGTAAAGTGGGAAATAGCTTTACAAGGTACGTCTGGCCTTGAACTT
TCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTT
ACAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGGAGCCTTTTTGT
TCCTTTTCACATGTTATCAAGCGGTTAAGGGAGGGCTGAAAATTCTGGAT
GAAATTCAGGGCAATCTATCAGAAGTGAAGCGGGGAGAGAGAGTAGGAGC
AAAGAGGAAATATGGTACCCCCAATAAGTATACAGGCCTTTCCAAGGGTC
TTGAACCCGAGGAAAAGTTAAGGCCAGGTAAGAATACCTGGGGAGAGATT
GGAAGGAAGGAGAAGGAAAAACAACAGTCCCCGTATCCTCACTGTTTGTT
TCTAGCCCTTCTTTTCTATACCCATCCCCATATTGATTTCACCACTCCCG
CTTTTTCCTCCCTTTTATCCCTTTGCCCCCCCTCCCTCCTTTTTTTTTTC
CCCCCCCTTCCCCCTTTTCTTTTTCCCCCCTTGCCTCCTATCCCCCATTC
ATTCCCCTTCGCCCCTTTTCCCCCCCTCCCCCTTTTTTTTTTCCCCGCCA
TTTAACCGCCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTATCCCATTT
TTTAAATGGGGTTATTTGATTCTCCTGAGTCTAACTTCTTGAGTTCTTTG
TATATATTGAATATTACCCCTCTATCAGATATAAGATTGGTAAAGATCTT
TTTTTAACCAATAAATAAATAAATAAATAAATAAATAAATAAATACATAG
ACAAACAAATAAACTAAAAAATTAAATCAAGGAAGCATAGTTACATATAA
CAGAAAATGAACAAAATTGTTTAAAAATGTATGTTTTAAAGTTATGTTTC
ATATAGAATGTGAGTAACTGGTTAGACAGTTCAAATGGATTTTTACCAGT
TTTTATAATTGAGACACACAAAAATTGTAATTTCTGAAAGCATCATCAAT
GAATTGAAAATGCCTTATGAGTAGTTTTTATACCCAGTGGGTTTGGGTGG
TTGGAAAAGTGTTTTTCNNTTTTTTTTTTTTTTTTTNTTTTTTTTNTTNT
TTTTTTTTTTTTTTTTTNTTTTTNNTTTTTTTTTNTTTTTTTTTTTTTTT
CTTTTTTTTTTTTTTTTCTNTTTTTTTTTTTTTTTTTTTTNNTTTTTTCT
TCCTTTTTTTTTTTGCTTCTTTCTTTTCCTTTTTTTTCTTTCTCCCTTCT
TTTCTTTTCCCTCTCCTTTTTTTTTTGCGTCTCTTTTTTCTCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_p16.g1 MSMg01no166_p16.g1 CHROMAT_FILE:
MSMg01no166_p16.g1 PHD_FILE: MSMg01no166_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:38 2005
         (434 letters)



>mm_chr1_163571506_163572339
          Length = 834

 Score =  683 bits (353), Expect = 0.0
 Identities = 407/435 (93%), Gaps = 20/435 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagctctgtatcccattttttaaatggggttatttgattctcct-gagtctaac 59
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 817 tttgtttagctctgtatcccattttttaaatggggttatttgattct-ctagagtctaac 759

                                                                       
Query: 60  ttcttgagttctttgtatatattgaatattacccctctatcagatataagattggtaaag 119
           ||||||||||||         |||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttcttgagttct---------ttgaatattacccctctatcagatataagattggtaaag 708

                                                                       
Query: 120 atctttttttaaccaataaataaataaataaataaataaataaataaatacatagacaaa 179
           |||||||| ||||||||||||||||||||||||||||||| ||||||        |||||
Sbjct: 707 atctttttctaaccaataaataaataaataaataaataaacaaataa--------acaaa 656

                                                                       
Query: 180 caaataaactaaaaaattaaatcaaggaagcatagttacatataacagaaaatgaacaaa 239
           |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 caaataaaataaaaaa-taaatcaaggaagcatagttacatataacagaaaatgaacaaa 597

                                                                       
Query: 240 attgtttaaaaatgtatgttttaaagttatgtttcatatagaatgtgagtaactggttag 299
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 596 attgttttaaaatgtatgttttaaagttacgtttcatatagaatgtgagtaactggttag 537

                                                                       
Query: 300 acagttcaaatggatttttaccagtttttataattgagacacacaaaaattgtaatttct 359
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 536 acagttcaaatggatttttaccagtttttataattgagacagaaaaaaattgtaatttct 477

                                                                       
Query: 360 gaaagcatcatcaatgaattgaaaatgccttatgagtagtttttatacccagtgggtttg 419
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaaagcatcatcaatgaatcgaaaatgccttatgagtagtttttatacccagtgggtttg 417

                          
Query: 420 ggtggttggaaaagt 434
           |||||||||||||||
Sbjct: 416 ggtggttggaaaagt 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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