Query= MSMg01no167_a24.b1 MSMg01no167_a24.b1 CHROMAT_FILE:
MSMg01no167_a24.b1 PHD_FILE: MSMg01no167_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:44 2005
(204 letters)
>mm_chr1_36549908_36550511
Length = 604
Score = 368 bits (190), Expect = e-106
Identities = 196/198 (98%)
Strand = Plus / Plus
Query: 7 gaattcaaggtgaacttcgcctacatgagaccctgtctcagaaaactgaactaaacaaaa 66
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaaggtgaacttggcctatatgagaccctgtctcagaaaactgaactaaacaaaa 266
Query: 67 ccagatgcgacacgggaaagctggaagcaaagggtgtcgccgagggacttgggttatagg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccagatgcgacacgggaaagctggaagcaaagggtgtcgccgagggacttgggttatagg 326
Query: 127 ttctttctccctctgcctccaccttttaaccccttccgtgtgaatcagggccatagggca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttctttctccctctgcctccaccttttaaccccttccgtgtgaatcagggccatagggca 386
Query: 187 ggggtggggtagggtggg 204
||||||||||||||||||
Sbjct: 387 ggggtggggtagggtggg 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space: 116816
Effective search space used: 116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no167_a24.g1 MSMg01no167_a24.g1 CHROMAT_FILE:
MSMg01no167_a24.g1 PHD_FILE: MSMg01no167_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:44 2005
(651 letters)
>mm_chr1_36702902_36703952
Length = 1051
Score = 851 bits (440), Expect = 0.0
Identities = 454/462 (98%), Gaps = 7/462 (1%)
Strand = Plus / Minus
Query: 192 atacacacagaaacatttacatttttaaaatttgtattacatttatttatttggatt--- 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1051 atacacacagaaacatttacatttttaaaatttgtattacatttatttatttggagtggg 992
Query: 249 gtttttgtgcatgtgccacagctgaggtcagaagacatttgtaggagttggttctctcct 308
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 g----tgtgcatgtgccacagctgaggtcagaagacatttgtaggagttggttctctcct 936
Query: 309 tccaccatatgggtctcagggattgaactcaggtcgtcaagtctgatgataaatacctta 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 tccaccatatgggtctcagggattgaactcaggtcgtcaagtctgatgataaatacctta 876
Query: 369 gcccactgagccatcttgctggcccaaaattttaaaaaatgcttttgaaaactcagtagt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 gcccactgagccatcttgctggcccaaaattttaaaaaatgcttttgaaaactcagtagt 816
Query: 429 aagaataattttgctgcctttgacctttctactgagtgcacacaggattgtggaagcatg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aagaataattttgctgcctttgacctttctactgagtgcacacaggattgtggaagcatg 756
Query: 489 acttaaaggtcagagaattccacacaaaaagggagctacatgtgtggctgcttacatcag 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 acttaaaggtcagagaattccacacaaaaagggagctacatgtgtggctgcttacatcag 696
Query: 549 aaggtgtttgtgactgaaattgtggctcattttctgggcacatggcattctccagtggag 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aaggtgtttgtgactgaaattgtggctcattttctgggcacatggcattctccagtggag 636
Query: 609 aaaccattctctgagaaaggctctctgacagcagccactttg 650
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaaccattctctgagaaaggctctctgacagcagccactttg 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
