BAC Information

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BAC

Clone NameMSMg01-167C01
Chromosome1 (Build37)
Map Location 196,158,031 - 196,158,541
singlet/doubletsinglet
Overlap genenone
Upstream geneLamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167C01.T7 (MSMg01no167_c01.b1)MSMg01-167C01.TJ (MSMg01no167_c01.g1)
ACCAG364731AG364732
length695768
length of high quality
(start - end)		634 (18 - 651)---
definitionCHROMAT_FILE: MSMg01no167_c01.b1 PHD_FILE: MSMg01no167_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:49 2005CHROMAT_FILE: MSMg01no167_c01.g1 PHD_FILE: MSMg01no167_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATTCGGAGAGGATCCGCGGAATTCCATGTTCTCACCAAAGCAGA
CACAACTCCATCACAGCCTACCCACTTCCTCACCCAACACTTCACTGCTT
CCAGACACCTAACTTTCCCCTTGCACCCCTGAGTTTAGAACATATATGCT
TCAGCAAGCATATATGCACAGGAGGGTCTCTGCTTCTTCTACTAGCACAG
AGATCTACCCAAAGCTGTCTCCCCTATCTAGGACTACTGTAACTTCACTG
GCCTCAGCCATATTGCTTCTATGGAGGTTTTTGTTTTTTTTTTTTAAACA
AAAACAAACAAACGAATAAATGAAAAAAACCCCAAAGTCTAGATTTTTAT
AACTGTGTTGGTATAAAGACTCCTGAAACACAGACTAAATTCATTGTTGG
GTATTTAGTTGTATGATACCCATTTATTCTTCTGAGTGAAAATAAATTTT
CATGGGCTTCTAAAAATGCTTTGGGCTTGGCCTGAGTGCTGGGCTCCTAG
ATTATCATACCTAGACAAGTCTACCCTGTGTCTGAGAGGCTTTCCCTTCC
TTGACAGCACCTAATACCTTCCCTATCCCTTATGTTTCATGATCTCCTTT
CTAATACTCTACCCCTGCTTTGCAGTTATCTGTTTATCCTGTTTCCCACT
AACCTGAATACTGCTTGGAAGAAAGAACTGCTTTGTCCACTTTAG

TTTTCCTTTTTTTNTNNTNNTNNNNTCTTTGCCCCGGACGACCCNATCGA
ANTCTTTTGAATGAAGCGGGNGCCCTGGNGTTTGTTGTTTCGAAAAAGNA
GGNGANNNNNNGANTTTGCGAAGAAAAGGGGNNNNGAGGANNNNNGNNNG
GNNGAGANGNNGNGGANNNNGGGCCCCGANNNNNAANNAAGAGGGAAAGG
GGAAAGAAAAGAAGGGGGAGAGGGNAGGGGAGAGGAGGGAGAAGGGGGAA
GAAGAAAAAGAGAGGGGANAGGAGAGGNGGGNGAGGAGGAGGAGAAAGAG
GAANTTTTTTAAAANGANGGAGGGANGGAAGGNNGGGANAANNANNNGGG
AAANNNGNNGGGNGGNNTTTTTTTTTTTTGGAGAGAGGAGGAAGGGAGGA
NAGAGNAAGAGAGGTACGGCCCCACACCCAGAAGAGGCACCAACAGGAAA
GAAGGACACAGGCCCCACAACGAACAGAGCAGCGCAAGCAACAAGAGCCA
GAAGCAGGAAAGAACCCAGAGGCCCCACAACAGAGGAAGGGAGACAGAAA
AGGCGGCACAGCGACACAAGGGAGCACGACACAGCGAGAAAAAAGAAAGA
AAAAAGGAAACCCCAAGGCAAAAGGACGGACCGGGAGGGGAACACCCAGA
GAGAGGCAACGCAGACACGAAGGAACACACAAGGAACGCAGACACCGGAA
AGAGGAAATTACTTCAAAACCCAGGACACCCGAGATGGAAGAAACGCCTT
CTTAAACACATGAAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_c01.b1 MSMg01no167_c01.b1 CHROMAT_FILE:
MSMg01no167_c01.b1 PHD_FILE: MSMg01no167_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:49 2005
         (634 letters)



>mm_chr1_196158031_196159064
          Length = 1034

 Score =  866 bits (448), Expect = 0.0
 Identities = 497/516 (96%), Gaps = 7/516 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattccatgttctcaccaaagcagacacaactccatcacagcctacccacttcctcacc 67
           ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaatttcatgttctcaacaaagcagacacaactccatcacagcctacccacttcctcacc 452

                                                                       
Query: 68  caacacttcactgcttccagacacctaactttccccttgcacccctgagtttagaacata 127
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 451 caacacttcactgcttccagacacctaacttttcccttgcacccctgagtttagaatata 392

                                                                       
Query: 128 tatgcttcagcaagcatatatgcacaggagggtctctgcttcttctactagcacagagat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 391 tatgcttcagcaagcatatatgcacaggagggtctctgcttcttctactagcacaaagat 332

                                                                       
Query: 188 ctacccaaagctgtctcccctatctaggactactgtaacttcactggcctcagccatatt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctacccaaagctgtctcccctatctaggactactgtaacttcactggcctcagccatatt 272

                                                                       
Query: 248 gcttctatggaggtttttgtttttttttttt--aaacaaaaacaaacaaacgaataaatg 305
           |||| |||||||||||||  |||||||| ||  |||||||||||||||||| ||||||||
Sbjct: 271 gcttttatggaggttttt--ttttttttgttccaaacaaaaacaaacaaacaaataaatg 214

                                                                       
Query: 306 aaaaaaaccccaaagtctagatttttataactgtgttggtataaagactcctgaaacaca 365
           ||||||   ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aaaaaa---ccaaagtatagatttttataactgtgttggtataaagactcctgaaacaca 157

                                                                       
Query: 366 gactaaattcattgttgggtatttagttgtatgatacccatttattcttctgagtgaaaa 425
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 156 gactaaattcattgttgggtatttagttgtatgatactcatctattcttctgagtgaaaa 97

                                                                       
Query: 426 taaattttcatgggcttctaaaaatgctttgggcttggcctgagtgctgggctcctagat 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  taaattttcatgggcttctaaaaatgctttgggcttggcctgagtgctgggctcctagat 37

                                               
Query: 486 tatcatacctagacaagtctaccctgtgtctgagag 521
           |||||||||||||||||||||||| |||||||||||
Sbjct: 36  tatcatacctagacaagtctaccccgtgtctgagag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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