Query= MSMg01no167_j05.b1 MSMg01no167_j05.b1 CHROMAT_FILE:
MSMg01no167_j05.b1 PHD_FILE: MSMg01no167_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:22 2005
(394 letters)
>mm_chr1_90931163_90931956
Length = 794
Score = 733 bits (379), Expect = 0.0
Identities = 385/387 (99%)
Strand = Plus / Minus
Query: 8 ttcaatatgtttcggcatgagaagtgtgatttcttggttgagtggagtgcctcccccact 67
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ttcaatatgttttggcatgagaagtgtgatttcttggttgagtggagtgcctcccccact 735
Query: 68 tttttggcttcttttagtgttcgaattcttgactttggagagttttccagattagtaaca 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tttttggcttcttttagtgttcgaattcttgactttggagagttttccagattagtaaca 675
Query: 128 ttcgtgattgcacatggcagccgaggaacatgttgcactatgaataatgcatgctttccc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttcgtgattgcacatggcagccgaggaacatgttgcactatgaataatgcatgctttccc 615
Query: 188 ctttccatatgtaggtgtgcgcctccctctctagaaagattagaataacttctgtatata 247
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctttccatatgtaggtgtgtgcctccctctctagaaagattagaataacttctgtatata 555
Query: 248 tcatgttctatgtgtagatgctatttctctttgtaagattaaaatgacttctgaacatgt 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tcatgttctatgtgtagatgctatttctctttgtaagattaaaatgacttctgaacatgt 495
Query: 308 atagaattgtatacacacatatgcacattactctataggaatgctatcattttaatatat 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atagaattgtatacacacatatgcacattactctataggaatgctatcattttaatatat 435
Query: 368 tgtatgcagcattttatatatgtacac 394
|||||||||||||||||||||||||||
Sbjct: 434 tgtatgcagcattttatatatgtacac 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_j05.g1 MSMg01no167_j05.g1 CHROMAT_FILE:
MSMg01no167_j05.g1 PHD_FILE: MSMg01no167_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:22 2005
(456 letters)
>mm_chr1_90777585_90778440
Length = 856
Score = 845 bits (437), Expect = 0.0
Identities = 452/457 (98%), Gaps = 1/457 (0%)
Strand = Plus / Plus
Query: 1 catgctggctcaagaaaggcaatcacatggttcatttttaaactacaagctaaagggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 catgctggctcaagaaaggcaatcacatggttcatttttaaactacaagctaaagggcct 259
Query: 61 ctttcttttcgttcttcttgatttttt-ccatgggactgtgttattacttgaaagaataa 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 260 ctttcttttcgttcttcttgatttttttccatgggactgtgttattacttgaaagaataa 319
Query: 120 ctgacatgggcacttagatttgacttggcatatgttcttgaagtgtgtgtgagcctgtct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgacatgggcacttagatttgacttggcatatgttcttgaagtgtgtgtgagcctgtct 379
Query: 180 tctcaaggaaagtatgtccagtatatgttgtccatgatgggaatttagtttagtgcacaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctcaaggaaagtatgtccagtatatgttgtccatgatgggaatttagtttagtgcacaa 439
Query: 240 gttgaaatttagggaaactttctgttaccatgagcacataggtctgagttttccatggct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttgaaatttagggaaactttctgttaccatgagcacataggtctgagttttccatggct 499
Query: 300 ggtgatgagctgagtgaatatggcttctgatactgtgtaataacacatgtctgtataggc 359
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 500 ggtgatgagctgagtgaatatggcttctgatactgtgtaataagacatgtccgtataggc 559
Query: 360 aagggtccctgacattgtctaccaggccagtgcatgacataaaaccaggtgtggattgag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagggtccctgacattgtctaccaggccagtgcatgacataaaaccaggtgtggattgag 619
Query: 420 ttttgttccaagcgttctattccagatattcatggat 456
|| ||||||||||||||||||||||| ||||||||||
Sbjct: 620 ttctgttccaagcgttctattccagagattcatggat 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
