BAC Information

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BAC

Clone NameMSMg01-167L02
Chromosome1 (Build37)
Map Location 91,000,816 - 91,001,209
singlet/doubletsinglet
Overlap geneSh3bp4
Upstream geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
Downstream geneLOC383542, EG665688, Centg2, Gbx2, Asb18, Iqca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167L02.T7 (MSMg01no167_l02.b1)MSMg01-167L02.TJ (MSMg01no167_l02.g1)
ACCAG365097AG365098
length775731
length of high quality
(start - end)
---394 (74 - 467)
definitionCHROMAT_FILE: MSMg01no167_l02.b1 PHD_FILE: MSMg01no167_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:31 2005CHROMAT_FILE: MSMg01no167_l02.g1 PHD_FILE: MSMg01no167_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCNNNNNNNNNNNNNCCGCCCCCCCCCCCCCCCCCCGCNNNNCCCT
CAATATTTGCGGCCCNTATAGTTTCTCAATCATGAANGNANGGNGGNNNN
NNNTGTTCCTAAAAAAGNGGGNNNGNNGGGNNNAGNNNGNNNNGGNNNGA
NGNNNNNGNNNGCCCCGGGNNGGGGANNNNNGNNNNNGGNNNGNGNNGGG
NNNNNNNNAGNNGGNNNNNNNNNNNNNNAGGGGAAAGGNAAGGGNAGGGG
NNANNNGAAGNNAAGGNGAAGGAAGGGGGGNAGNNNAAGGGTTTTTTGGN
NANAGNGGGNNGGNGNNNANNAAAAGGAGGAGAGAAGGGGAAGAAAANNA
ANNAGGATTTTTTTGTTTTTGGGGGGGNGGGGNGNNNNNGNAAGGAGNAA
AGAGNAGGGGCCCCCCCCCCCCCCCAGGAAGGGAGAGGAAANNAAGCAAA
CAGGCCGCCCAAGAANACAAAACGAGAGAGCNAAGGGCGACCAAGGAGCG
AGAGCCCACGCAAGAGAACACACAAGGCCGCGCAGGCGGGAAGAAAAGGA
CGGGAAGACCGAACCACCGGGGGGCGCCGAACGGCACACGCGACCCAAGC
ACCACAACCCGGGGACGACCACCGACCGACAGGAACCCCCAAAGAAAGAC
CCACAGCACCGACGGCGGAAAGACGAGGGGCGGGACGCGCCCGAGGCCCG
CCGCCCCCCTTTTTTTTTTTAGAGGGCGGCCACCGCCGGGCCCCCTGTAT
CATATGCTATTTATTACTTCTCACT
NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGCCGCAATCTGGAATTTCAGGGCATTCCTGGACCT
CCCAGGGGCTCGTGGAGCTGACCTGCACTTGGAGGCTTTGGGAGGCAACA
CGTCACCAAAGGGATCAAGACTGCACCCCTCCTTACTGAAGGACTCTGGG
GTGGTTTTTTTCCTCCCTTCCAAGTTGGAACCAGCTCAAGAGACTAACTT
TGAAGTTGTGTGGGCTTTGGCCCTTGCTTTCCTCCGTGCCCACGTCCTCG
CCTTTGCTCTTCCCATGCCCTCACCGTGCTGGCTGCTCTTGGCATCTCTC
CTGGCCCCCAGCCCGCACCTGTGGGTGGGGGCCCACTTGCCTCTGGCTTG
AGCCTGCAGCCGCCTGGCCCACCGCCTGTTGCGTAAGTAGCCTGGCATGG
AACAGGGGCTTGTAAACGTCTCTGGAAAGCCAGGAAACAGGTCTTTCTGC
TTTGTGGTTCAGAAGGTCTCTGAAGCTGCCCCCGTGGTTGTAGCATGGAA
GACTCAGAGCTGATATGTTGGCTTATCCAGTGAGACGTCAGTTTAAGGAG
ACTTACTACGTGAATGTCCTGGAATGCCCACCTCGTGATATTACTTTTGT
TTTTTTCCTCCCCATCCCCCAACTGTTACGCCTTCTGCTTATTTGTGGTT
CTCCACTTGGTTTTTATGTTCCGTGGTGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_l02.g1 MSMg01no167_l02.g1 CHROMAT_FILE:
MSMg01no167_l02.g1 PHD_FILE: MSMg01no167_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:31 2005
         (394 letters)



>mm_chr1_91000616_91001409
          Length = 794

 Score =  708 bits (366), Expect = 0.0
 Identities = 387/394 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaatttcagggcattcctggacctcccaggggctcgtggagctgacctgcacttgga 60
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 201 ctggaatttcagggcattcctggacctcacaggggctggtggagctgacctgcacttgga 260

                                                                       
Query: 61  ggctttgggaggcaacacgtcaccaaagggatcaagactgcacccctccttactgaagga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ggctttgggaggcaacacgtcaccaaagggatcaagactgcacccctccttagtgaagga 320

                                                                       
Query: 121 ctctggggtggtttttttcctcccttccaagttggaaccagctcaagagactaactttga 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ctctggggtggtttttttcctcccttccaggttggaaccagctcaagagactaactttga 380

                                                                       
Query: 181 agttgtgtgggctttggcccttgctttcctccgtgcccacgtcctcgcctttgctcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgtgtgggctttggcccttgctttcctccgtgcccacgtcctcgcctttgctcttcc 440

                                                                       
Query: 241 catgccctcaccgtgctggctgctcttggcatctctcctggcccccagcccgcacctgtg 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtgccctcaccgtgctggctgctcttggcatctctcctggcccccagcccgcacctgtg 500

                                                                       
Query: 301 ggtgggggcccacttgcctctggcttgagcctgcagccgcctggcccaccgcctgttgcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 501 ggtgggggcccacttgcctctggcttgagcctgcagccgcctggcccagtgcctgttgcg 560

                                             
Query: 361 taagtagcctggcatggaacaggggcttgtaaac 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 561 taagtagcctggcatggaacaggggcttgtaaac 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)