Query= MSMg01no167_m20.b1 MSMg01no167_m20.b1 CHROMAT_FILE:
MSMg01no167_m20.b1 PHD_FILE: MSMg01no167_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:40 2005
(610 letters)
>mm_chr1_135769978_135770989
Length = 1012
Score = 1048 bits (542), Expect = 0.0
Identities = 592/614 (96%), Gaps = 12/614 (1%)
Strand = Plus / Plus
Query: 7 ggaattcacccattctcc-tgcccacacagagctgccgacgacagggaggggaagcacag 65
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcacccattccccatgcccacacagagctgccgacgacagggaggggaagcacag 266
Query: 66 taaagatccactgagcataaccatccaatcaacctctagtgaaggcttggaatgtgcaag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taaagatccactgagcataaccatccaatcaacctctagtgaaggcttggaatgtgcaag 326
Query: 126 gtgacaatcgaggacaaaaatggccaagacatgctgtcctggttcatagaagttcatagt 185
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 327 gtgacaatcgaggacaaaaatgaccaagacatgctctcctggttcatagaagttcatagt 386
Query: 186 cttctaagagaaagcttgtaaacaagcaaattataaataccatgagagaaatgcagcagc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cttctaagagaaagcttgtaaacaagcaaattataaataccatgagagaaatgcagcagc 446
Query: 246 aggcactcttgcatggtataggggattgcttgtaactcagaacaggggagagaaaaattc 305
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aggcactcttgcatggtacaggggattgcttgtaactcagaacaggggagagaaaaattc 506
Query: 306 aaagcgtgcaggcagatacactagcatccaatgtccatgcctgtacttat-ttgaacact 364
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 507 aaagcgtgcaggcagatacactagcatccaatgtccatgcctgtacttaacttgaacact 566
Query: 365 ttagacaactcatatctaaaatggggtcaagtgtcttccttatggtcccatgactattgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttagacaactcatatctaaaatggggtcaagtgtcttccttatggtcccatgactattgg 626
Query: 425 ataatgtatctatcatcttcaatccagggtctggcacctagttggcacttaataaattat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ataatgtatctatcatcttcaatccagggtctggcacctagttggcacttaataaattat 686
Query: 485 agctattaatgacagacattgattt--------aaaaaaaatttagctgcaacaaaatat 536
|||||||||||| |||||||||||| |||||| || ||||||||||||||||
Sbjct: 687 agctattaatgagagacattgatttttttttttaaaaaatat--agctgcaacaaaatat 744
Query: 537 ctcatcatggaactgccctttgtaatgtataagacactctcagatccattatctcaaccc 596
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcatcgtggaactgccctttgtaatgtataagacactctcagatccattatctcaaccc 804
Query: 597 tgaggatctgggag 610
|||| | |||||||
Sbjct: 805 tgagaagctgggag 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1012
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1002
Effective search space: 601200
Effective search space used: 601200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_m20.g1 MSMg01no167_m20.g1 CHROMAT_FILE:
MSMg01no167_m20.g1 PHD_FILE: MSMg01no167_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:40 2005
(522 letters)
>mm_chr1_135906117_135907038
Length = 922
Score = 917 bits (474), Expect = 0.0
Identities = 480/482 (99%)
Strand = Plus / Minus
Query: 1 ttggcttatcctcaaagtcttgagttcaactcccctaatctgcagatgcaccaggagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttggcttatcctcaaagtcttgagttcaactcccctaatctgcagatgcaccaggagagc 423
Query: 61 cctatgctggcatttgctgatggcaacccttacacatgttggtactttccccgtggtaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cctatgctggcatttgctgatggcaacccttacacatgttggtactttccccgtggtaat 363
Query: 121 cttcaccgtgtgtcaccctctgttcccgggaactctggtcctttactcatggtgaccaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cttcaccgtgtgtcaccctctgttcccgggaactctggtcctttactcatggtgaccaat 303
Query: 181 tcacagttttggttttacttcatgaattttcaagcccttcttgactcttggagttttgag 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 302 tcacagttttggttttacttcatgaattttcaagtccttcttgactcttggagttttgag 243
Query: 241 ctatgagcttagttttctacaggctctatagtggagaacttctgtgatggtttgtgtatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctatgagcttagttttctacaggctctatagtggagaacttctgtgatggtttgtgtatg 183
Query: 301 ctccgcccaaggagtgtgtattagaaggtgtggccttgttggagtaggtgtgtctctgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctccgcccaaggagtgtgtattagaaggtgtggccttgttggagtaggtgtgtctctgtg 123
Query: 361 ggtgtgggctttaagaccctcatcctagctgcctggaagctagtattctgctagcaccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ggtgtgggctttaagaccctcatcctagctgcctggaagctagtattctgctagcaccct 63
Query: 421 tcagatgaagatgtagaactctcagctcctcctgcaacatgtttgcctggatgctgccat 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 62 tcagatgaagatgtagaactctcagctcctcctgcaacatgtttgcctggaggctgccat 3
Query: 481 gc 482
||
Sbjct: 2 gc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
