BAC Information

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BAC

Clone NameMSMg01-168C05
Chromosome1 (Build37)
Map Location 118,644,213 - 118,644,549
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5a
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168C05.T7 (MSMg01no168_c05.b1)MSMg01-168C05.TJ (MSMg01no168_c05.g1)
ACCAG365419AG365420
length9871,148
length of high quality
(start - end)
356 (466 - 821)390 (71 - 460)
definitionCHROMAT_FILE: MSMg01no168_c05.b1 PHD_FILE: MSMg01no168_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:08 2005CHROMAT_FILE: MSMg01no168_c05.g1 PHD_FILE: MSMg01no168_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGCACTGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTA
GGGGTCTCCGTTATGCCTGGTGTTGGGGAAGGTACTGTGGCCTCACCTGT
GATCCTAGGTATGTCAGAGCACCTGGGAGTCAAGCTTCCTCTAGTTGTTG
TGGGAGTAAGTGCAGAGCCAGTGCCCCCCAACCACTCTGGGCACAAGTTC
AAACTGGAAGGACATCTTCTGATTTCTCCATGTGCCCTGTGGCACACACA
TGACACAGTAAATAAATAAATAAATAAATAAATAAATAAATAAACTTTAA
AAAAATTATTACTGCAAGCTGGACAGATAGCTCATTTTAAGCATGCTTCC
TATGAAAGCTTGAGATATCCAAGTACCCTCTTTGGTTAATTGATCAATAA
GCTGGGCATGATGGCAAATAATTGTCATTCTAGTGTTGGACAGCTTTTTT
TTTCCCCCCCCCCCCATGGTGGTAAATTGGTTAAAAAAAAATGATAGATT
CTGTGATGGTTTGTATACTGTTGGACCAGGGAGTGGCGCCATCTGAAGGT
GTGGCCTTGTTGGAAAAGGTGTGACCTGGTTGGAATGGGTGTGTCACTGT
GGGTGTGGGCATAAGATCCTCACCCTAGTTGCCTGGAAGTCAGTCTTCCA
CTAGCAGGCTTTGGATGAAGACATAGAACTCTCAGCTCTGCCTGCACCAT
GCCTGCCTAGATACTGTCATGCTCCCACCTTGATGATAATGGACTGAACC
TCTGAACCTATAAAGCCAGCCCCAATTAAATGTTGCTTTTTATAAGACTG
GCCTTGGTCATGTTGCCTGTTCACCGCAGTAAAACCCTAACTAAAACAGA
AGTTGGTACTGGGAATGGGATATTGCTATTATATGCCTGGACCTGCTGTT
ATTTGAAAAAAAGTGGATTTTTGGGACTTTGCTTTTTTTAAACAATGGAA
CTGTTTTAATATGGGCTTAAGTGGTCCTTCTCCTTAA
NNGGGAAGAGGCGAGCCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATGGTGGATAATATTCAGAACACACTACG
AACATCAAAATTTATATCAGAGGAGGATTTGTCATTTTTAAAGCATCAAA
CACCTCCACACACAATGAGTTTACTCTAGAATTTTGGCTATGTTCCTTGT
AATAGACATGACTTTATCCATACACACACACACACACACACACACACACA
CACACACACACACACACACACACAAAGACACACACACACACACACACACA
CACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGGAAACGTGATGCTTTCCTCAGCTCTTT
TTATACTCTCTTCCACACTTGTATGGAATTTGTCTAAAACACTCAAGTTT
TTTTTTTCCCCCCCCCCCTCTGTTGGCATTATCTCTCAAAAAAAGGAGGA
TATGAATAATACCATACCTGCATAAAATGGACAACAATTACACCAAGGCT
ATAGTAATAGAAGACAGTTGTAATGTATTTTCTGAGAATTGTTACAAATA
ATAGATTAGTTTGACATTAAAAATTACTCTATGAGAAGTTCAAAGAGTAA
GAACACAATAACCACAGAGAATATATCTCACAAACGCCAATATTTTACCA
TAGTAAACTATAGAGAACATTATGAAACATCTTTGTTTTAGGGGAGTTAT
TTACATAATTCTTGCATAAATCCTTACATTTTAAAATAATGTTTTAATGT
ATGTGAAATTTAACTCTATACCATTATTATTCAATATGTCACATAAATAA
TGGGTAAAATATTTTTTATATTTTAGTTTTGAAATAACTGCTTTAATATG
AGAAAATATAATTTTGGTGGTAAAAATGTTTCCTGTTGGTTCCAAAAAAA
ATTTTTTCCCCTGGAAAGTTTCTCAATATTAAAACCTTCTTCAACTTGTT
TAAAATTTTTTAAAATTTTTTTCTCCTTTTTAAAAAAATAAATTTTCTTT
TTTTTTTTTTTTTCTTCTTTATTGACTATTTATTCATCGCCGATCGTTAA
ATACAATCACTCTACTTGCTTTATCCTATCTTCTTCTTTATTCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_c05.g1 MSMg01no168_c05.g1 CHROMAT_FILE:
MSMg01no168_c05.g1 PHD_FILE: MSMg01no168_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:09 2005
         (390 letters)



>mm_chr1_118644202_118644991
          Length = 790

 Score =  478 bits (247), Expect = e-139
 Identities = 326/385 (84%), Gaps = 52/385 (13%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatggtggataatattcagaacacactacgaacatcaaaatttatatcagaggaggattt 60
           ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 348 tatggtggacaatattcagaacacactatgaacatcaaaatttgtatcagaggaggattt 289

                                                                       
Query: 61  gtcatttttaaagcatcaaacacctccacacacaatgagtttactctagaattttggcta 120
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 288 atcatttttaaagcatcaaacacctccacacacaatgggtttactctagaattttggcta 229

                                                                       
Query: 121 tgttccttgtaatagacatgactttatccatacacacacacacacacacacacacacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgttccttgtaatagacatgactttatccatacacacacacacacacacacacacacaca 169

                                                                       
Query: 181 cacacacacacacacacacacacaaagacacacacacacacacacacacacacacagaga 240
           ||||||||||||||||||||||                                      
Sbjct: 168 cacacacacacacacacacaca-------------------------------------- 147

                                                                       
Query: 241 gagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 300
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ------gagagagagagagagagagagagagagagagagagagagagagagagagagaga 93

                                                                       
Query: 301 gaggaaacgtgatgctttcctcagctc----tttttatactctcttccacacttgtatgg 356
           |||||||| ||||||||||||||||||    |    ||||||||||||||||||||||||
Sbjct: 92  gaggaaacatgatgctttcctcagctcaccat----atactctcttccacacttgtatgg 37

                                    
Query: 357 aatttgtctaaaacactcaagtttt 381
           |||||||||||| ||||||||||||
Sbjct: 36  aatttgtctaaagcactcaagtttt 12


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 171
Number of extensions: 69
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)