Query= MSMg01no168_f13.b1 MSMg01no168_f13.b1 CHROMAT_FILE:
MSMg01no168_f13.b1 PHD_FILE: MSMg01no168_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:30 2005
(268 letters)
>mm_chr1_8541137_8541804
Length = 668
Score = 474 bits (245), Expect = e-138
Identities = 260/265 (98%)
Strand = Plus / Minus
Query: 4 ggaattcactgttttctcaacctgttgagcctcaaaccaatgggagatctcgtctcaaaa 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggaattcactgtcttctcaacctgttgagcctcaaaccaatgggagatctcgtctcaaaa 525
Query: 64 atcaagacaagtggctctactggaacaaagccccaggttgactgttggcctttatatcca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atcaagacaagtggctctactggaacaaagccccaggttgactgttggcctttatatcca 465
Query: 124 ggtgcatgcatgaacatatatacacttatagaataaacaacaaaactgtttggcactgca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ggtgcatgcatgaacatatatacacttatagaataaacaacaaaactgtttggcactgca 405
Query: 184 taatactgttctattatgcattttactccaaagggaatattggttcattctcaggtaaat 243
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 404 taatactgttctattatgcattctactccaaagggaatatgggttcattctcaggtaaat 345
Query: 244 gggagtgaccgtgacagaaagatga 268
||||||| |||||||||||| ||||
Sbjct: 344 gggagtggccgtgacagaaatatga 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no168_f13.g1 MSMg01no168_f13.g1 CHROMAT_FILE:
MSMg01no168_f13.g1 PHD_FILE: MSMg01no168_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:31 2005
(277 letters)
>mm_chr1_8407774_8408446
Length = 673
Score = 414 bits (214), Expect = e-120
Identities = 258/274 (94%), Gaps = 4/274 (1%)
Strand = Plus / Plus
Query: 2 catgacacttgtttagtgagtgtatggcttggaagcctatcagagtaaatttttttctaa 61
||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 202 catgacacttgtttattgagtgtatggcttggaatcctatcagagtaaa-ttttttctaa 260
Query: 62 caaatcatgagtttccatttctactcagaagacttttagaaataaaaatctgtatgaata 121
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 caa---atgagtttccatttctcctcagaagacttttagaaataaaaatctgtatgaata 317
Query: 122 ttcacttagcaaaatgtatcttataacttactaaacttaagtgatgatgtaccattacat 181
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttcacttagcaaaatttaacttataacttactaaacttaagtgatgatgtaccattacat 377
Query: 182 atgtcccacatatgcttactttgaagagaggactggaatagatatcagtgacatgactct 241
||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||
Sbjct: 378 atgtcccacatatgcttactttgaagagaagactggagtagataccagtgatatgactct 437
Query: 242 aattctggtattcaggcttttggaagaacaatga 275
|| | ||||||||||||||||||||||||||||
Sbjct: 438 aacacaggtattcaggcttttggaagaacaatga 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 673
Length adjustment: 9
Effective length of query: 268
Effective length of database: 664
Effective search space: 177952
Effective search space used: 177952
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
