BAC Information

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BAC

Clone NameMSMg01-168H19
Chromosome1 (Build37)
Map Location 84,731,500 - 84,880,823
singlet/doubletdoublet
Overlap geneTrip12, Fbxo36
Upstream gene5033414K04Rik, LOC100039638, Dner
Downstream geneSlc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168H19.T7 (MSMg01no168_h19.b1)MSMg01-168H19.TJ (MSMg01no168_h19.g1)
ACCAG365655AG365656
length697705
length of high quality
(start - end)
312 (46 - 357)286 (81 - 366)
definitionCHROMAT_FILE: MSMg01no168_h19.b1 PHD_FILE: MSMg01no168_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:45 2005CHROMAT_FILE: MSMg01no168_h19.g1 PHD_FILE: MSMg01no168_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,731,500 - 84,731,807)(84,880,542 - 84,880,823)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACA
AAAAACAAAAAAACACTGAGTACTATACACCCTCTAAGCAAAAACTATGA
ATAGGGGAGATTTAAAATAATAATAAATAAATGAATTCAAACCAGTACTA
AAAGGACTTCTAAACTCATTGCAATCCTCCTGGTTTTCCCATCTCCTGTC
TCCAAAACTTTCAGAACAGCACTGGCTTTTGTCACTTACCACCAAGCCCC
AATCCCTTAGTTTAGTCCCAATCTGCTAGACATCTGTAAGCCAGTGAGAT
GACTCACTTGTTTTGGGAACCCGCCCCTCCTGTGCCCGATTCCCTAAACT
CAATCTCCAAATTCTACGCGACAGAAGAGGAAGACTGATTCCACAAGGAT
GCCCTCTGACCCTCACATATGCACCAGGGTATATGGTGCCTACACACACA
CAACTATGTACTCATAAATGCCCACATGCATGTCCACACTCATATACAAC
AGGAATGAAAAGTAAACAGTAAGATGTAGGTGGCAGCAACCTGTAATACC
CAAGCTTAGGAGGCTGAGGCAGGAAAATATTAGGTTCAAGGCTGCTCTGA
ATCCATGGTAATCCCTAATCTCAAAAACAAAAGATAAAATGGGAAAA
ACTCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAATAATTCATAAGAA
TGTAGTTACTGAGCTGTGGATCAGCCATTGTTCTAAGTGGTCTCAAAGAT
CCATCAACAAACAAAGTTCCTAACACAACAAAAAAGACAAGAAACAAACA
GCTGGCTGCACAGTGCCCCCTATGACAAGGAGTGCGTGGGAGGCGGCATT
CCAGGGAAGGCTGTGATTTTCTGCCTAGTGGTTGGGGGGGCTAATAAGAC
AGTGTCAGCACGGACTGAACAGTCTTCAAGCCAGTGGAGACTTCCCAGAA
AATGTCCCTTTTTNGTTTGTTTCACCNTTTCAANACCCCCTCTTGAGGTT
GGGACTGTGTCACTGTGTCGCCTAAGAAAAGAAAAAAAACTAGAAGATCT
GCCTTCAAAAAAACCCTTGGCCAGGTAGCGGTGGCACACACCTTTACTCC
CAGCGCTTGGGAGGCAGAGGCAGACTGATCTCTGAGTTTGAGGTCTACAG
AGTGAGGCCAGCCTGGTCTTCCAGGACACTCAGGGCTATACAGAGAAACC
CTGTCTCAAAAAACAAACAAGCAGCTCCTGGGTGTATTTGTTTTGGCGAG
CCCTTTACATTCCCACAGATGGGCCTGTTTCCCAGTGAATGTTCTGTAAT
CATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_h19.b1 MSMg01no168_h19.b1 CHROMAT_FILE:
MSMg01no168_h19.b1 PHD_FILE: MSMg01no168_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:45 2005
         (312 letters)



>mm_chr1_84731296_84732007
          Length = 712

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagccagggctacacagagaaaccctgtctcaaaaaaacaaaaaacaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacagccagggctacacagagaaaccctgtctcaaaaaaacaaaaaacaaa 264

                                                                       
Query: 65  aaaacactgagtactatacaccctctaagcaaaaactatgaataggggagatttaaaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaacactgagtactatacaccctctaagcaaaaactatgaataggggagatttaaaata 324

                                                                       
Query: 125 ataataaataaatgaattcaaaccagtactaaaaggacttctaaactcattgcaatcctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataataaataaatgaattcaaaccagtactaaaaggacttctaaactcattgcaatcctc 384

                                                                       
Query: 185 ctggttttcccatctcctgtctccaaaactttcagaacagcactggcttttgtcacttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggttttcccatctcctgtctccaaaactttcagaacagcactggcttttgtcacttac 444

                                                                       
Query: 245 caccaagccccaatcccttagtttagtcccaatctgctagacatctgtaagccagtgaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caccaagccccaatcccttagtttagtcccaatctgctagacatctgtaagccagtgaga 504

                   
Query: 305 tgactcac 312
           ||||||||
Sbjct: 505 tgactcac 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no168_h19.g1 MSMg01no168_h19.g1 CHROMAT_FILE:
MSMg01no168_h19.g1 PHD_FILE: MSMg01no168_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:45 2005
         (286 letters)



>mm_chr1_84880342_84881027
          Length = 686

 Score =  491 bits (254), Expect = e-143
 Identities = 275/282 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaaataattcataagaatgtagttactgagctgtggatcagccattgttctaagtgg 60
           |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct: 482 tcttaaataattcataagaatgcagttactgagctgtggaccagtcattgttctaagtgg 423

                                                                       
Query: 61  tctcaaagatccatcaacaaacaaagttcctaacacaacaaaaaagacaagaaacaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctcaaagatccatcaacaaacaaagttcctaacacaacaaaaaagacaagaaacaaaca 363

                                                                       
Query: 121 gctggctgcacagtgccccctatgacaaggagtgcgtgggaggcggcattccagggaagg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gctggctgcacagtgccccctgtgacaaggagtgcgtgggaggcggcattccagggaagg 303

                                                                       
Query: 181 ctgtgattttctgcctagtggttgggggggctaataagacagtgtcagcacggactgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctgtgattttctgcctagtggttgggggggctaataagacagtgtcagcacggactgaac 243

                                                     
Query: 241 agtcttcaagccagtggagacttcccagaaaatgtccctttt 282
           ||||  ||||||||||||||||||||||||||| ||||||||
Sbjct: 242 agtcagcaagccagtggagacttcccagaaaatttccctttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)