BAC Information

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BAC

Clone NameMSMg01-168K05
Chromosome1 (Build37)
Map Location 171,265,861 - 171,411,024
singlet/doubletdoublet
Overlap geneEG383613
Upstream genePbx1
Downstream geneNuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168K05.T7 (MSMg01no168_k05.b1)MSMg01-168K05.TJ (MSMg01no168_k05.g1)
ACCAG365752AG365753
length1,0111,145
length of high quality
(start - end)
258 (513 - 770)372 (71 - 442)
definitionCHROMAT_FILE: MSMg01no168_k05.b1 PHD_FILE: MSMg01no168_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:00 2005CHROMAT_FILE: MSMg01no168_k05.g1 PHD_FILE: MSMg01no168_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,265,861 - 171,266,116)(171,410,653 - 171,411,024)
sequence
NGGAACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTTTTTATTGGAAGACTCTGAGTAAAGTACATTGCCCTTCACACAG
CGGATAATCTCCATCCAGTCAATGGAATGCCTCAAGAGAGCAAAAGGCTG
ATCTTGCCCAACCGTCTTTAGTTTCATTTGCTGCTGGTGTGATAAAATAC
CCTGTCAAAGCAACTTAGTGGGGAAAGAGCTTATTTCAGCTCACAATGCC
ATACTAGTGGAAAAACCACAGCAGAAGGAATGTGAGGCAGCTATTCATCC
AGAGTCAAGAGCAGAGAGTAATGAATTAATTAATACATACAGGGGATGCT
CTTCTTGCTTTTCCACCATTATACAATTTCATTCCCTTCTTAGGGAATGT
TTATTCCCACTGTGGGCAGGTCTTCCAACTTCAACTAAATTAATAAAGAT
TTTTTTTCCCCCCCCCCCACANAGGANAANATGATTTAAAAAAAAAAAGG
TTGAGANCTTGNCAGATGGTTCTAGATTGTGTCAAGTTGACAATTAGAAC
AAATAAATGAGCATATCAATCAAGTGCAAATACAGCCAACAGATCACAGT
TGATATCAATCTGTGACTTTAGCTTCTGGGTTTTTCTATCTGGTGATAGA
TTGCAGCCTTAAAACCTTCATAATCACACAAACAAATATATTTAAGAAAA
ATATGGTTCTGTTTCTCTGGTGAATTCTAAGTCAAGAAGAGTTTAACACC
CAGATATAAGGAGACATATCATATATATGGGAAGAGCAAGGAGGCTTCAG
TTCATGAAACAGATTGCATGAGACATATAAAAAAGAAAAGAATGAAAGAA
AATTACTGAGGTAACAACTTTATTTTTTTCATGGGTTGATCAAAAGAACA
TCCTGTGGTGGCGACAACCTGGCTTCAGATAATCTTTCTAAATGGATACA
TATATATCTCTCCCCACCATTGTTTCGGACTTGTGTACAGGGATAATTTT
TGTTCCTTCTA
NTTGTAGACTGGAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTACTGTCATGTTTACACCACTATCTTGG
TGGATGAGGTCTCTGACTGTAATGTGTAATGGCGAGGCAACCCCCCTCCC
TAATTAGATACTAAAAAGAACCAGGCTAAATGTGTTCAATTATTTTACTT
TGTCAAATTGTTTTCCTCAGAACCAGCTGAGAACCTGAAGAACTGGTGCC
AGGACCACTGTGTATAACAAGGATTTAAAACAAGCCCTGAGTTCTTATCA
CCTCTCAGTGCCTAAGATCCCTGACCACCCAAGTCAGAAGAGCACAGCCC
TGTCCAGTCCTACATACCTGGAATTTGGCCAACAAAGCACACTGTTTATT
CCTTCCTTCATCCGAATAAAATTTTTTTTTTGCCGGTTAATGCTTTTTTT
TTCCCCCCCCCCCTCTCTCAAATGTGTGTGCAAAAAAAAAGGAAGGATCC
GAACAGCAGGGTGAACTGGTGGTACATTTTCAAGTGCCAACCGTGAAGAA
GAGGTGTCGTATTATTTACCTTTAGATTGCTCTAGGACAGGAGGAGGCGG
GGCTTGGTAGCGGAGCTCTTGCCTAGTGTGCTCAAAGCCCTGCCTTTGAT
TTTCAGTTCTAACAAAATAAATCCTCTCTAACTTGGTTCCGTTTTAAACT
TTTAACATTTTCAGATGTTCAAATTGCACCTGTCCTTTTGTGTAAGAGAC
TCAAATTCCTTGTTCAAAACAGAAATATTTTTAATTGTACTTACATATGT
AATCCTTTTCTTGTAAACATGCGTTTTATCCGACGCGCTGTGTATCTCTT
TCTTCCTTGTATTTTTTAAAGATGACGTTCAAATATATTTGTTAATTGAA
ATTAGTGTCTATTTTACCTACTCTCGTCTTTCTTAATAATTCACATAATT
TTGTTTTTTTGCATCCTTATTCTTTTCCATTTTTTTTTTATTCTTATTCT
TTTCTTTTCTTTTTGTTACATTGTTTTTTTCCTTGCTCTTTTTTATATTT
TTTTATGCTTTTCTTCTCTTTTTTCTTATTCTATTTTTTTAACTTTTTTA
CTATTTTCTCTCAATTCTTTTTATTATCTTATTTACAATATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_k05.b1 MSMg01no168_k05.b1 CHROMAT_FILE:
MSMg01no168_k05.b1 PHD_FILE: MSMg01no168_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:00 2005
         (258 letters)



>mm_chr1_171265661_171266318
          Length = 658

 Score =  495 bits (256), Expect = e-144
 Identities = 256/256 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatggttctagattgtgtcaagttgacaattagaacaaataaatgagcatatcaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatggttctagattgtgtcaagttgacaattagaacaaataaatgagcatatcaatca 260

                                                                       
Query: 61  agtgcaaatacagccaacagatcacagttgatatcaatctgtgactttagcttctgggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgcaaatacagccaacagatcacagttgatatcaatctgtgactttagcttctgggtt 320

                                                                       
Query: 121 tttctatctggtgatagattgcagccttaaaaccttcataatcacacaaacaaatatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctatctggtgatagattgcagccttaaaaccttcataatcacacaaacaaatatatt 380

                                                                       
Query: 181 taagaaaaatatggttctgtttctctggtgaattctaagtcaagaagagtttaacaccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagaaaaatatggttctgtttctctggtgaattctaagtcaagaagagtttaacaccca 440

                           
Query: 241 gatataaggagacata 256
           ||||||||||||||||
Sbjct: 441 gatataaggagacata 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no168_k05.g1 MSMg01no168_k05.g1 CHROMAT_FILE:
MSMg01no168_k05.g1 PHD_FILE: MSMg01no168_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:00 2005
         (372 letters)



>mm_chr1_171410453_171411224
          Length = 772

 Score =  696 bits (360), Expect = 0.0
 Identities = 369/372 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttactgtcatgtttacaccactatcttggtggatgaggtctctgactgtaatgtgtaat 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tttactgtcatgtttacaccaatatcttggtggatgaggtctctgactgtaatgtgtaat 513

                                                                       
Query: 61  ggcgaggcaacccccctccctaattagatactaaaaagaaccaggctaaatgtgttcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggcgaggcaacccccctccctaattagatactaaaaagaaccaggctaaatgtgttcaat 453

                                                                       
Query: 121 tattttactttgtcaaattgttttcctcagaaccagctgagaacctgaagaactggtgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tattttactttgtcaaattgttttcctcagaaccagctgagaacctgaagaactggtgcc 393

                                                                       
Query: 181 aggaccactgtgtataacaaggatttaaaacaagccctgagttcttatcacctctcagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aggaccactgtgtataacaaggatttaaaacaagccctgagttcttatcacctctcagtg 333

                                                                       
Query: 241 cctaagatccctgaccacccaagtcagaagagcacagccctgtccagtcctacatacctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cctaagatccctgaccacccaagtcagaagagcacagccctgtccagtcctacatacctg 273

                                                                       
Query: 301 gaatttggccaacaaagcacactgtttattccttccttcatccgaataaaattttttttt 360
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 272 gaatttggccaacaaagcacactggtgattccttccttcatccgaataaaattttttttt 213

                       
Query: 361 tgccggttaatg 372
           ||||||||||||
Sbjct: 212 tgccggttaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)