BAC Information

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BAC

Clone NameMSMg01-168K23
Chromosome1 (Build37)
Map Location 31,934,192 - 31,934,547
singlet/doubletsinglet
Overlap genenone
Upstream genePtp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
Downstream geneLOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168K23.T7 (MSMg01no168_k23.b1)MSMg01-168K23.TJ (MSMg01no168_k23.g1)
ACCAG365786AG365787
length9691,126
length of high quality
(start - end)
351 (43 - 393)323 (72 - 394)
definitionCHROMAT_FILE: MSMg01no168_k23.b1 PHD_FILE: MSMg01no168_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:06 2005CHROMAT_FILE: MSMg01no168_k23.g1 PHD_FILE: MSMg01no168_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTAGCATTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCAATTGCTAACCGTTACTCAGAAAGGTGATTCTACATGCACCTCAT
AGCGATCACTAAAACATTATATGGGCTAGAATTTGCGACAGAGGGAAAGA
TATTAAGATAGGAAAGACTTATAAAACTTAACCGCTAACTGTATCATATC
ACTATTGTAGGCTATTCAATGTGCTTTTACCATATTTCCTAAAGACCCTT
TATTTTCTAGATAATGCTACTTTAGCATGTTCTGGTGTTCCAACTATGAA
CCTCACTCATACCTGTTATGGAGTCTGCTGTGAGAGGATAAAATTGATTT
GATAGTCACATTAATAAAGCAAATTACAAATAAAATAAAGAACTTTTTTT
TTCAAGACAAGAGATCATTACCAATGCATCTGAGGTTCATGTATTTTTTT
TTATTCCCCCCCCCCCCANAANNGANGGNCCAAAAAAAAAAAAAGGGGGG
GGACNGGGAACANANAGAAGGANCAGCANAAGAACGACAGACAAAGGAAA
NNAAGGGCCNNNNCANNNCNNNNNAANNNNANAANAANNANNACNNNANN
NANAACANNANNACNNNANNACNNNANNGGNNNANNNGNNNAGNCAAAGA
CAGNCANCGGNNAGGACNGAGNGCNACNNNAAGGGCNNCAGNCANAACCG
GNNCNNCGGAAGAANNNGAAGNNGGGNNNGAAGAAGGAANNGAANNNCNC
CNNNAAGGCAANAAGAAAAGGCCAANNAAACAAAAAACCAACCCCGAAAA
AAAAAAGGCAAGAAAGAAAGGAAAGAAAAAGGAAGGGAGGGAAGAAAGGC
AGGCAGGCANCCCCCAACANCACAACGAAAAAACCCANACCACACAAGAC
ACACACACGCCAACCCACCACAAAAAACCGCACAACAACGACGAACAAAA
GACCACAAACCCCAAACAC
NNCCTCATGAGGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAAGGAAATACAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAACACT
CCTACATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATCGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAATATTTT
TTCATGCTCCACTATGTTCACAGCAGCTTTATCTATAATAGNTATTTTTT
TGTCTTCCCCCACCCCCANNNNAANAGCCCCTTCCAAAAAAAAAAGGGGG
TNCNTCTACNCNNTGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGA
TATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAA
CACATGAAACTCAAGAAGAATGAAGACTGAAGCGTGGATACTATGCCCCT
CCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTTACCGAGACAAAGT
TTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGG
ATCCACCCCAATAATCAGCTTCCAAAACGCTGAAACCTTTGCATACACTA
GCAAGATTTTATTGAAAGGACCCAGCATGTATTTGTTCTCTTTGGGAAAA
TATGGCGGGGTGCCTAATAAAAACCTTAAATGGGAGCTTTCCCTTTTAGC
TTAATGGTGGTGGTTTTATGGGCGTCTCCTCCGGGTGGGGATTTTAATAA
AATTATTCTCAGAGGAGTTTATGTGTGTTTCTGTTCTCCCTCACTTTTGG
TGGAGATAAACTCTTTGGGATTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_k23.b1 MSMg01no168_k23.b1 CHROMAT_FILE:
MSMg01no168_k23.b1 PHD_FILE: MSMg01no168_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:06 2005
         (351 letters)



>mm_chr1_31933997_31934747
          Length = 751

 Score =  520 bits (269), Expect = e-152
 Identities = 331/357 (92%), Gaps = 11/357 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaattgctaaccgttactcagaaaggtgattctacatgcacctcatagcgat 64
           ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||
Sbjct: 196 gaattcttcaattgctaaaagttactcagaaaggtgattctacatgcacctcatagtgat 255

                                                                       
Query: 65  cactaaaacattatatgggctagaatttgcgacagagggaaagatattaagataggaaag 124
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cactaaaacatggtatgggctagaatttgcgacagagggaaagatattaagataggaaag 315

                                                                       
Query: 125 acttataaaacttaaccgctaactgtatcatatcactattgtaggctattcaatgtgctt 184
           || |||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 316 acatataaaacttaacaactaactgtattatatcaccattgtaggctattcaatgtgctt 375

                                                                       
Query: 185 ttaccatatttcctaaagaccctttattttctag---------ataatgctactttagca 235
           ||||||||||||||||||||| |||||||| |||         |||||||||||||||||
Sbjct: 376 ttaccatatttcctaaagaccatttattttttaggtcacactgataatgctactttagca 435

                                                                       
Query: 236 tgttctggtgttccaactatgaacctcactcatacctgttatggagt-ctgctgtgagag 294
           ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 436 tgttctggtgttccaaccatgaacctcactcatacctgttatggagtac-gctgtgagag 494

                                                                    
Query: 295 gataaaattgatttgatagtcacattaataaagcaaattacaaataaaataaagaac 351
           |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 495 gataaaattgatttgatagtcacattcataaagcaaattacaaataaaagaaagaac 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)