BAC Information

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BAC

Clone NameMSMg01-168M09
Chromosome1 (Build37)
Map Location 145,208,067 - 145,208,468
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545369
Downstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168M09.T7 (MSMg01no168_m09.b1)MSMg01-168M09.TJ (MSMg01no168_m09.g1)
ACCAG365850AG365851
length9971,143
length of high quality
(start - end)
405 (41 - 445)295 (97 - 391)
definitionCHROMAT_FILE: MSMg01no168_m09.b1 PHD_FILE: MSMg01no168_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:14 2005CHROMAT_FILE: MSMg01no168_m09.g1 PHD_FILE: MSMg01no168_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCGCAATGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATCTCTCTGAGTCATACCTGCTTAAAGAACATTGACAAAGACCAGCCCTT
CTCCACTGACTTGCTCCCCTTCTTTACTGGGTGCTTTGCTTCCCAGCTCT
CATAATGTGTTCTTCGAATTGTTATGCAAACGATTTCATCTCCCCCCTAC
AGACTTAGACAATGAGATTCCCTTTCCACATGTAAGGAAATGTGTTTGTT
TTGAGACTGACTCTCACTACATCGCTCTGGATGGCCTAGAACTTGCTATG
TAGACCAGGTTGGCACCTAACTCACAGACATCCACCTTCTTCTGCCTCCA
AAGTGCTGTGATTAAACACCTGCCAACTATAAGGAAATTGATATTTTTTT
TCTTGTGAAACCCAGTCCTTTTCCAAAGGTGAATCCTAGTGTTTGTTTTT
TTTTCCCCCCCCCCCCCTNATANTNATTTGTTCAAAAAAAAAGGGGGTTT
TAGGAGAGANATATTGTTATANTATTATATAGATAGAAGGTAAATAATAT
TTAGAGAGGTGAAGTAGTTANAGNGTTTTGTGANTTATTAGAGGTAAGAA
GGTGATTTNANTTTTTNNTAAGNTAGNATTTGTNTNTNNATNGATTGTTN
TTNTNTNNTTNAANTAAAGAANATAATGGNTNAGGAAGNATAGAATATGT
GTTATGTGGTGTTGTAGTATTTAAGAATGTGGGATTATGTGTNAATNAGT
TTTTTTTTTTTTNAGGTAGAGAGNAATNNATTTNTNTAATAATTTAATGT
AGTTAAAGGAATGTAAAAAAAATGAAGTTTATTGTTTTTTAAGGGATTTG
TAAAAGTTAAAAAGTTTTTTAATTATTTAATTGGAATTTATTGAATTTTA
ATTTTGTTTTTATTAAAAAGGTTAAGATATGGTGGTAATTTATAGTTATG
TAAAATAAAAAAATTGTTTAATTTTTTAATAAAGGGTTTTGGGTTTT
NTTTATATAGGAGGCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCCTTCCAGACTTTTACCAGGAATGGG
TGTTGGATTTTGTCAAATGTTTTCTCAGCATCTAAGGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTATGTTGATTGATTTAT
CAAAAGAGACATGGAGGGGCACTTCATACTCATCAAAGGTAAATTCTTTC
AAGATGAACTATCAATTCTGAATATCTATGCTCTAAATGCAAGGGCAGCC
ACCTTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACCTCA
CACAATAATAGTGGGAGACTTCATACTCCACTGTCATCATTTTTTTTATC
CTGGAAACAGAAACTAAATATAGACACATTGAAAGTAACTTTTTTTTTTT
TCCCCCCCCCCCCNAANAAANATCCCCCCCACAAAAAAAAGGGGGAGTNT
TGGATATACCTTCTTCTCAGCACCTCTTGGTACCTTCTCCAAAATTGACC
ATATAATTGGTCACAAAACAGGCCTCAACACATATAAAAATATTGAAATT
ATCCCATGCATCCTATCAGATCACCACAGACTAAGGCTGATCTTTATTAA
CAACTTAATTAATATAAAGCTCACATTCACGTGTAAGTTGATCAATACTC
TACTCATTGATACTTTGTTCCAGGAATAAATAAAGATATTTATATGGTTT
TTCCCATTTTATGTTTTTGATTCCTCAACATATCTAAACCTTATCGGTAC
AATGAATTCTTTTCTAAAATTAAAACTCTCATTTCTGATTGTCTCCTTTT
TTATCTTAAATATATATCATATTCTACCTTCTTTTTTGCTCACTTTAAAT
CTTTTATAACATTATGTACCTAATTCTCCTCTTTACTTTTAATATCCTTT
ATATTTTTTCTATTCCTGTTTTATTATTCTTCTTTTGTTAATCTTTATTT
GTATTTTTCGTTTTTTTTCTTCTTATGCTTTTTTGTTTTTTTATTCTTTT
TTTTTTTATTTTTTATTTTTTTTTTCTTATTTCTATTTTTACATTCTGTT
CTTTATCTCTTTTATTTTTTTCCTTTTTTTATCAATTTCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_m09.b1 MSMg01no168_m09.b1 CHROMAT_FILE:
MSMg01no168_m09.b1 PHD_FILE: MSMg01no168_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:14 2005
         (405 letters)



>mm_chr1_145207864_145208668
          Length = 805

 Score =  731 bits (378), Expect = 0.0
 Identities = 396/402 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatctctctgagtcatacctgcttaaagaacattgacaaagaccagcccttctc 63
           |||||||||||||||||||||||  ||| ||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattcatctctctgagtcatagatgcataaagaacattgacaaagagcagcccttctc 263

                                                                       
Query: 64  cactgacttgctccccttctttactgggtgctttgcttcccagctctcataatgtgttct 123
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cactgactttctccccttctttactgggtgctttgcttcccagctctcataatgtgttct 323

                                                                       
Query: 124 tcgaattgttatgcaaacgatttcatctcccccctacagacttagacaatgagattccct 183
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcgaattgttatgcaaatgatttcatctcccccctacagacttagacaatgagattccct 383

                                                                       
Query: 184 ttccacatgtaaggaaatgtgtttgttttgagactgactctcactacatcgctctggatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttccacatgtaaggaaatgtgtttgttttgagactgactctcactacatcgctctggatg 443

                                                                       
Query: 244 gcctagaacttgctatgtagaccaggttggcacctaactcacagacatccaccttcttct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcctagaacttgctatgtagaccaggttggcacctaactcacagacatccaccttcttct 503

                                                                       
Query: 304 gcctccaaagtgctgtgattaaacacctgccaactataaggaaattgatattttttttct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcctccaaagtgctgtgattaaacacctgccaactataaggaaattgatattttttttct 563

                                                     
Query: 364 tgtgaaacccagtccttttccaaaggtgaatcctagtgtttg 405
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtgaaacccagtccttttccaaaggtgaatcctagtgtttg 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)