BAC Information

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BAC

Clone NameMSMg01-168M22
Chromosome1 (Build37)
Map Location 139,087,115 - 139,087,460
singlet/doubletsinglet
Overlap geneLOC100042567
Upstream gene2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3
Downstream geneLOC100043143, Ptprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168M22.T7 (MSMg01no168_m22.b1)MSMg01-168M22.TJ (MSMg01no168_m22.g1)
ACCAG365876AG365877
length1,1411,141
length of high quality
(start - end)
360 (30 - 389)371 (71 - 441)
definitionCHROMAT_FILE: MSMg01no168_m22.b1 PHD_FILE: MSMg01no168_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:18 2005CHROMAT_FILE: MSMg01no168_m22.g1 PHD_FILE: MSMg01no168_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCAGCATTGGGCCTATCGACTCCTAAGGGAGAGGATCCGCGGAATTC
CTGGTCCAAGGGAGGCCTTTGCCTTGTGATTAGCCATAGCCTTGTCCAAA
GATCTTCTCTGGAAGATTCTTACAGATGAGCAACAATGGATCTAGAGTTA
ATTAGCTTACACTTCCCTAGGAATCTTTAGCAGTGCTGGTATAACCTTGT
ATAGCTTATGTGCTTGATCCCTGGTTCTTATATTAATCACATTAATGCTC
ATTTAACATGGGAGTACATTCCCTTACAATAATAAGATACATTCACAATA
ATGAACACCATATTTTGGTATTTTGGCCTGCTTTAATAGAAGTAAAACCC
TGAGGCACGGAGACAACATGACAGATATTGGCCACTAGAATTTTTTCAGT
ATACACAAAAGGACCCTGGGAATGAGTAGNAATCAGTGTCTTTTTTCTTC
CCCCCCCCCCAAAAGNNANTCGCTGCTAAAAAAAAAGGGGGNNNNNNNNG
ANGNNGNNAAGNAANAGANNNNNNNANANANAAGAAAAGNNNGGNNGGAA
NNANNNANNNNANNNNNNNNGNNNGNNNNANNNNNNNNNNNGGNANGGGN
NAGAAANNANAAGGNAGNNGGGNGNGGNGGNGNANANNNNNANNNNNAGN
ANNNGGGAGGNAGAGGNAGGNAGAANNNNGAGNNNGAGGNNAGNNGGGNN
NANAGAGGGAGNNNNAGGANAGGNAGGGAAAAANAGAGAAANNNGGGNNN
AAAAAANAAAAANAAAAAAANAAAAAAAAGAGGGGGGGGAGAGAAGGNNA
AGAGGNNAAGAGGAAAGAANGGAANAAANAAGGAAGAGAGAAAAAAAAAG
AAGAAAAAAGAAGGAGGGGGAAAAAAAAAAAGGGAAGGGAAAANAGAGGA
AANNAAAAAGGGGGGGGGGAAAAAAAAAAAAGAGGAGAAANAGAGAAAAA
AAAAAAGAAAAAAAAAAAAAGAAAAAGAAAAAAAAAAAAGGAGGAAGGAA
GAANGAGGAAGGAAAAAGAAAGAAAAGAAAAAGAAGAGAAAGAGAAGAAA
AAAAAAAAAGAAAAAAGAAAAAAGAAGAAAGAAAAAAAGAAAAAAAAAAA
AAAAAAGAAAAAANAAAAAAAGAAAAGAAAAAAGAGAAAAA
NNNTTCAAGAAGGAGCCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTCTAAATGGGGCATTTATAACACAA
TCCTTCCCAAGTCTCAGGGATTGCACTGGCTGGTTTTGGGTGTCAACTTG
ACACAGGCTGGAGTTATTACAGAGAAAGGAGCTTCAAGTGAGGAAATGCC
TCCATGAGATCCAGCTATAAGACTTTTTCTTAATTGGCAATCAAGGGGGA
GGGCCCATTGTGGGTGGTGCCATACCTGGGCTGGTAGTCTTGGGTTCTAT
AAGGGAGCAAGCTTCTGGAAGAGAGAGCAAACTATAAAATCAGGGGTGGT
AAATGATCACAAAGAAACACAATATTCCAGACAGAGCAGGGCATTTCTAT
ATATAAACTTATGGCAATATCAATAGCATGCACAAAGCCTGTGTTTTTTT
TTCCCCCCCCCCATCNNAGNATGGAGAAAGAAAAAAAAAAGAAATTCTCA
CTCCTAGCTAAGGAGCACTTGCATCTGATAGTTTCTGGGAGAGGGAGAAT
CAATATTCTTCAACAGTATTGCCACTGGTAAGTTGATCATGCTCCAGTGG
ATGACTGTACATCTAAGAATATATGGGCAGTACAAATTGGACTTAATGTC
TAGTATATATATTATGTGTGTGTGTGCGTATACCTATATATATATATATA
TATATATATATATATTAATACAATACTTTATATTTTTTCCATACTCTTAA
TCTCTTCTTTTTTTTTTTTTTCTCCTAATCATTTTTATTTTTATATATTA
TTTTTTTTTTTTCATAACTCTTTATATCTTTCCTTCTTTCTACTATTCTT
CCTAATTTTATTTTATAATATCTTCTTTTTTTCTTCTTTTTTTATTATTC
TACTTTATTTTCTCTCTCCTTTACTTTTCTTTTATCTATTCCTTTATTCT
TTTTTCTTTTTTTTTTTTCTCCTTCTTTTAATTATCTTTTTTTCTTATTT
TAAATCTCTTTTCTTTCTTATTTTTATTCTTAATCCTTACTTCCTCTCTT
CTTCTTTCTCTACTTCTCCTTTTATTTTTTCTTTTTTTTTTTCTATTCTT
TTTTTTTTTTTATCATTTATACCCCTTTCCTATCCCATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_m22.b1 MSMg01no168_m22.b1 CHROMAT_FILE:
MSMg01no168_m22.b1 PHD_FILE: MSMg01no168_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:18 2005
         (360 letters)



>mm_chr1_139086900_139087660
          Length = 761

 Score =  630 bits (326), Expect = 0.0
 Identities = 341/346 (98%), Gaps = 1/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcctggtcc-aagggaggcctttgccttgtgattagccatagccttgtccaaagat 74
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcctggtcccaagggaggcctttgccttgtgattagccatagccttgtccaaagat 275

                                                                       
Query: 75  cttctctggaagattcttacagatgagcaacaatggatctagagttaattagcttacact 134
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cttctctggaagattcttatagatgagcaacaatggatctagagttaattagcttacact 335

                                                                       
Query: 135 tccctaggaatctttagcagtgctggtataaccttgtatagcttatgtgcttgatccctg 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tccctaggaatctttagcagtgctggtataaccttgtatagcttatgtgcttgatccctg 395

                                                                       
Query: 195 gttcttatattaatcacattaatgctcatttaacatgggagtacattcccttacaataat 254
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 396 gttcttatattaatcacattaatgctcatttaacataggagtacattcccttacaataat 455

                                                                       
Query: 255 aagatacattcacaataatgaacaccatattttggtattttggcctgctttaatagaagt 314
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 456 aagatacattcacaataatgaacaccatcttttggaattttggcctgctttaatagaagt 515

                                                         
Query: 315 aaaaccctgaggcacggagacaacatgacagatattggccactaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aaaaccctgaggcacggagacaacatgacagatattggccactaga 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 761
Length adjustment: 9
Effective length of query: 351
Effective length of database: 752
Effective search space:   263952
Effective search space used:   263952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)