Query= MSMg01no168_p08.b1 MSMg01no168_p08.b1 CHROMAT_FILE:
MSMg01no168_p08.b1 PHD_FILE: MSMg01no168_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:32 2005
(308 letters)
>mm_chr1_128401285_128401991
Length = 707
Score = 542 bits (280), Expect = e-158
Identities = 298/304 (98%), Gaps = 1/304 (0%)
Strand = Plus / Minus
Query: 5 gaattctagatttctggattagggaggctctacttgcaatggtttttgagaagtatgctg 64
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 455 gaattctagatttctggattagggaggctctacttgcaatggcttttgagaagtatgctg 396
Query: 65 atattaataatcagttacatgagggcaacactttttaggatgtggctagcaaacaaatat 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 395 atattaataatcagttacatgagggcaatactttttaggatgtggctagcaaacaaatat 336
Query: 125 tttctggtggggaccacataagcgactattttagccatatgtgcagcacacatgagacca 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tttctggtggggaccacat-agcgactattttagccatatgtgcagcacacatgagacca 277
Query: 185 tttgtcacaactactcagcttgttaatcgtaccctaaatgcagccacggagagtctgtaa 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tttgtcacaaccactcagcttgttaatcgtaccctaaatgcagccacggagagtctgtaa 217
Query: 245 gaaggcaggtgccatttgaagcagctgtgttgcttggtcttcctgtgagtcctctaacaa 304
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 216 gaaggcaggtgccatttgaagcagctgtgttgcttggtcttccaatgagtcctctaacaa 157
Query: 305 gtgg 308
||||
Sbjct: 156 gtgg 153
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 707
Length adjustment: 9
Effective length of query: 299
Effective length of database: 698
Effective search space: 208702
Effective search space used: 208702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_p08.g1 MSMg01no168_p08.g1 CHROMAT_FILE:
MSMg01no168_p08.g1 PHD_FILE: MSMg01no168_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:32 2005
(281 letters)
>mm_chr1_128243186_128243866
Length = 681
Score = 480 bits (248), Expect = e-140
Identities = 263/268 (98%)
Strand = Plus / Plus
Query: 13 ctagactaaacgttacaatgcattatcacagaaaagaagacacgaagaggacagagcgct 72
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 213 ctagactaaacgttacaatgcattatcacaggaaagaagacacgaagaggacagagcact 272
Query: 73 ctgccttggagcaccaccaccgtcaacagcctgcaaccctctacacccaagctgggaggg 132
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 273 ctgccttggagcaccaccaccgtcaacagcctgcaaccctctacgcccaagctgggaggg 332
Query: 133 aggagctgaagtctcagggaagagcagagaaccccaagcttcccagggatctgagggaat 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aggagctgaagtctcagggaagagcagagaaccccaagcttcccagggatctgagggaat 392
Query: 193 gctggttaacttaaggagacagtgggtgctcgccaatcataatgaaaggtttgtatttgt 252
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 393 gctggttaacttaaggagacagtgggtgctcgccaatcataatgaaagggctgtatttgt 452
Query: 253 ttctttgattatgtctctgcttactgag 280
||||||||||||||||||||||||||||
Sbjct: 453 ttctttgattatgtctctgcttactgag 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
