BAC Information

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BAC

Clone NameMSMg01-169F03
Chromosome1 (Build37)
Map Location 75,497,237 - 75,497,504
singlet/doubletsinglet
Overlap geneAW822216
Upstream geneUsp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik
Downstream geneInha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169F03.T7 (MSMg01no169_f03.b1)MSMg01-169F03.TJ (MSMg01no169_f03.g1)
ACCAG366226AG366227
length790735
length of high quality
(start - end)
273 (107 - 379)279 (77 - 355)
definitionCHROMAT_FILE: MSMg01no169_f03.b1 PHD_FILE: MSMg01no169_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:58 2005CHROMAT_FILE: MSMg01no169_f03.g1 PHD_FILE: MSMg01no169_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCTTCTTTTTTTCTTTTCCCCCCCTACCCCNGTCCTTCTTTNCCTAA
TTNNNGGAGATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTAAATACAGTAAAACCACTACTCTGCTACTCTG
TTTAAGTGGCCTAAAAATCTGACCTAACCTCTTTTCTGTTGCTATAACAG
AGAAGCTGATGCTGGGTATTTTATAAAGAAAAAAAATTAGTTTAGCTCAC
AGTTCTGAAAACTCCAAAGTTGGTCTTCCCAGTCTTTAATGACACTGTCC
AGTCTTTAGTGACCCTACCCCAGTTTTTCACTAATTCAGACCATGACAAA
GAGATGGACAATCAGGCACGATCAGAATGATTCTAGTACCCAGCGTGGGT
GAACTCGCTTTGTAGCATCTATTATTTTACCGGACAATCCCACAAGTACC
TCCCGTTAAACCTCACCATTACGAATACTTCTTCAATAATCAACCTCCCC
TAGGCTCTTAGAGGTTCTAGAAACTGCCACCCTGAGGACTATAGTTACAC
CATATGATTATCATTCTGGTAAAAACTCATATCATATCCAAACCAAACCA
TAGCATTGCACAAATCTTTTTTCCTTTTTCCCTTTTTAATTTCCACCAAT
TGAACCTAGCCACCCTCATCGTATAGTTGTTCTTGCTCCCACTGCCCCCT
TATATCCCTCGATCTTTTAATTACTGATCATAAAAACACTATATCCCACA
TTACATTTTTCTCAATCCCCCCCGAATAATCTAACTTCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCGGCGAGATACTAGCTCAGG
CAAGACCTGGGAAATCTTTAACCCACCTAGTATCGACTCTGTCATGTGGT
TATTAGTGTTTGCTCTTTTGTTGTTGTTGTGCTTATTCTTGTTTTGTTTT
TGTTTTTGTTTGTTTTTTTAAAAGATTTAAAATTCTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTTATTTATTTATTATATGTAAGTACA
CTGAAGCTATCTTCAGACACTTTAGAAAACGGCATCATATTTTGTTAAGG
ATGGCTGTGTGCCTCCATGTCCTNTGCAGGACCCGAACCCAGGACCTTTG
GAAGAGCAGTCAGCACTCTTAAAAAAAAAAAAAACTCACCAGCCCTGTTT
TTGTTTTTGAGACAGAATTTCTCCATGTAGTCCTGGTTGCCCCAGAACTT
GCTCTATAGACTAAGCTGGTCTCAAAATTCACCTGCCTCTGTCTCCTGAG
CGCTGTAATTAAAGGTGTGTGCCATCACTGCCTGGCTTAGTGTTCACTCT
TATGCAGACCTATAATGAAAAGGAGAAGTTGAAGAAGGCAAAATACCAAA
TGTACAATTTATGATGAAGTAAAAAGGAGCTATGTCCTGTGTTCCAGGAG
TCAAACAGATTTTTTTTTTAAAGCCTGATATTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_f03.b1 MSMg01no169_f03.b1 CHROMAT_FILE:
MSMg01no169_f03.b1 PHD_FILE: MSMg01no169_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:58 2005
         (273 letters)



>mm_chr1_75496873_75497545
          Length = 673

 Score =  480 bits (248), Expect = e-140
 Identities = 263/268 (98%), Gaps = 1/268 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaaatacagtaaaaccactactctgctactctgtttaagtggcctaaaaatct 64
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 632 gaattcttaaatacagtaaaaccactactctgctactctgcttaagtggcctaaaaatct 573

                                                                       
Query: 65  gacctaacctcttttctgttgctataacagagaagctgatgctgggtattttataaag-a 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 572 gacctaacctcttttctgttgctataacagagaagctgatgctgggtattttataaagaa 513

                                                                       
Query: 124 aaaaaaattagtttagctcacagttctgaaaactccaaagttggtcttcccagtctttaa 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 512 aaaaaaattagtttagctcacagttctggaaactccaaagttggtcttcccagtctttaa 453

                                                                       
Query: 184 tgacactgtccagtctttagtgaccctaccccagtttttcactaattcagaccatgacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 452 tgacactgtccagtctttagtgaccctaccccagtttttcactaagtcagaccatgacaa 393

                                       
Query: 244 agagatggacaatcaggcacgatcagaa 271
           |||||||||||| |||||||||||||||
Sbjct: 392 agagatggacaagcaggcacgatcagaa 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)