BAC Information

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BAC

Clone NameMSMg01-169H07
Chromosome1 (Build37)
Map Location 107,438,609 - 107,438,914
singlet/doubletsinglet
Overlap genePign
Upstream geneLOC100041134, Cdh20, Rnf152, LOC100041985
Downstream geneLOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169H07.T7 (MSMg01no169_h07.b1)MSMg01-169H07.TJ (MSMg01no169_h07.g1)
ACCAG366323AG366324
length668725
length of high quality
(start - end)
324 (9 - 332)289 (435 - 723)
definitionCHROMAT_FILE: MSMg01no169_h07.b1 PHD_FILE: MSMg01no169_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:09 2005CHROMAT_FILE: MSMg01no169_h07.g1 PHD_FILE: MSMg01no169_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATAGGGAGAGGATCCGCGGAATTCAAAAACAGATCTGTACAACT
GCAGATCCTTATTTTGTTTGTTGTTGTTGTTTTTCGAGACAGGGTTTCTT
TTGTGTGATTCTGGCTGTCCTGAAACTAGCTACAAACCAGGTTGGCCTTC
GATTCAAAGAGATCTGCCTGCCTCTGCCTCCCAATTAATCCCTCCTGGGA
TTAAAGGCATGTACTACCACAACCAGCTTCTGATTTTTACTTCTTAATAA
AGACATTAAAAACACACATTAGAGAAAAGACACCAGTGTACTGTTCTAGT
TGGCAGTTTGACCTGGGAGGGTGGAGCTTATTTATTAGTTCACCTCTCCC
CCCATAGCCTATTTTATTCAGAGCATCAGACAATATATACCCTATGAAAT
AAGAAAGGACTCCTGAATAAAGCTCGAGTGAGTTCAAGCTGTATATAATC
ACAAGGACAAGCTTCACATGGCATAAGCATGTTTTTCCATATATACAAAT
GACAACAGCCAGTTGTAATGAATAATCTAAACTCCTATTTGCTGCACCTG
GAAGGGACATGAGAGTACATACCTAGAGAGATTCCATGTTTTATAGAAAC
TTACGCCTCAAGACTTGTCTTGTTCTCCTGCAGTTTTCTCACAAGCACTC
AGAATTTCCCTCTCACAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTAGGGTCTCCGAGAA
AACCTGCCTCAACAAACAAACACCCAAACCAACCAACCAACCCAACCCAT
CCAACCAATCAACCTTCCAGCTGGCTTCTTTGCAGAAATGAGAAGCAGAT
CTTAAAATTCACATGGAGATTTAAGAGACCTACAATAGCTACAGCAAACC
TAGGAGCACAGTTGTGTTGGGAGTAATAAAAGGCTTCAAGTTTCAAACTG
AATGCAGAAATGAATGTAAATACTCTATGAACACACCAAAACCATTTAGT
AATTACACNNCTGGTGGCCCCCGCCCCCCCCAAAACTCTCTTTTGGAATG
CTTTTGAGAAAGTAGCCCAGGCTAACAAAACAAATCACTACTGTAATACT
GGTTGGCCTAGAACTCACACCATCTTTTGATAGTGAGCTTCACTAGTACT
GAGATTATAGACATGTACCACCATGACTGGTGTAATTAAAAAAATTTTTT
TAGGGTTTTTGAGACAGGGTCTAGCCTTGACTTCTCCTGTCTCTATCTCC
TAAGTGCTGGGATTATATGGGTTTACCACCATGCTCAGTTTGATAAATGC
AAGTTAAAAAGGGAAAATGGAAAAACTATAAAACATTTATATGCACACAT
GAATAATTGCACAGATTTATCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_h07.b1 MSMg01no169_h07.b1 CHROMAT_FILE:
MSMg01no169_h07.b1 PHD_FILE: MSMg01no169_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:09 2005
         (324 letters)



>mm_chr1_107438393_107439116
          Length = 724

 Score =  576 bits (298), Expect = e-169
 Identities = 304/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcaaaaacagatctgtacaactgcagatccttattttgtttgttgttgttgttttt 76
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattcagaaacagatctgtacaactgcagatccttattttgtttgttgttgttgttttt 276

                                                                       
Query: 77  cgagacagggtttcttttgtgtgattctggctgtcctgaaactagctacaaaccaggttg 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cgagacagggtttcttttgtgtgattctggctgtcctgaaactagctacaaaccaggttg 336

                                                                       
Query: 137 gccttcgattcaaagagatctgcctgcctctgcctcccaattaatccctcctgggattaa 196
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gccttcgattctaagagatctgcctgcctctgcctcccaattaatccctcctgggattaa 396

                                                                       
Query: 197 aggcatgtactaccacaaccagcttctgatttttacttcttaataaagacattaaaaaca 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aggcatgtactaccacaaccagcttctgatttttacttcttaataaagacattaaaaaca 456

                                                                       
Query: 257 cacattagagaaaagacaccagtgtactgttctagttggcagtttgacctgggagggtgg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cacattagagaaaagacaccagtgtactgttctagttggcagtttgacctgggagggtgg 516

                 
Query: 317 agctta 322
           ||||||
Sbjct: 517 agctta 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)