BAC Information

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BAC

Clone NameMSMg01-169J20
Chromosome1 (Build37)
Map Location 96,676,099 - 96,676,400
singlet/doubletsinglet
Overlap genenone
Upstream geneAtg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169J20.T7 (MSMg01no169_j20.b1)MSMg01-169J20.TJ (MSMg01no169_j20.g1)
ACCAG366435AG366436
length720750
length of high quality
(start - end)
311 (36 - 346)87 (208 - 294)
definitionCHROMAT_FILE: MSMg01no169_j20.b1 PHD_FILE: MSMg01no169_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:21 2005CHROMAT_FILE: MSMg01no169_j20.g1 PHD_FILE: MSMg01no169_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAACTCCATCT
CAGTCTTTTAACACGCATCTTATATCAAAGTGAAGTTCAGAAATTGACAC
AAGGCTGTGGCACATGAGGTATTTGCAACAATCTTGGATGAGGGTTGTTG
GGCCAAAAGATTTAGTCAGCCAGTATACCTGGGCTTTACTCAAGATACAT
ATAGATGTGATGTTTACAGGTTAGTGCTTTTAATCATAGCATAATAATTC
CAGTAAGTAAATTGACCTTATTGCATTTGGAGTATTTGATTCAGTTTCCA
AAGTCCTTCTCAGGAAAAGAAAATACCTGTATTATTACACTGTTATTCCA
TTTATTTCCGTGAACTGGACCGCCTCACCACAATTAAATTATAACATTTT
ATAATGAATACCCTATTTATCTGAAAAAGGTAGCCAGATATGCCAATCTA
ATTAATTCTTGCTTTGTATTAATATTCTCACACTTCACATAGGTAAGTGT
TGAATAGCATGAAAAATTCATACCATATTCCACCCATGAAATTGAGATAG
CTAACAATTTTGTTAAAATGTATAGCTTGATAAGTAAAGTGGGGGTGGAT
GATGTTACACATGCATATTTTAAAGGGTTTGACAAGTCTGGAAGAGCAGA
GATGACTCCTTAGATAAGCTATTAGCATAACATATAAAATGTCTATACCA
ATCTCTGTTTTGCACTGCAA
CGATGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTAAGCTTTGTACCCCATTTTAA
TAGGGTTATTCGGTTCTCGGGAGCCAAACTTCTAAAGTTTTTAATATATT
TGGAATATAAGCCCTTTATGGAATATAGGGTTGGAAAAGATAGACTGAAG
GAGCTGAAGGGAATAGCAACCCCATAGAAAAAACAACAAGGTTAACCAAC
TAGACCTCCCCAAAACTTCCAGGGACTAAAACCCAATCAAAGAGTACACA
GGGAGGGATCCAGGGCTCCAGTTTTTTATGTAGCAAAAAAGGGCCTTACC
GGGCATCATTGGGATGGGTGCCCCCCGCCCCCAGGGAAACTTGATGANTT
AANNTAGGGGAATTCTAGGGAAAAAAGAAAAAAAAGAGTTTGAGGGGGAG
GGAGGCGTGCCCTTAGCCGTTTTTTTCTCTCCCCTCCTCTTCTCCTCACC
TCTCCCCCTTCCCCTCCAACCCCCTCTCCTCATCCCCCCTTCCAACCTTT
CCCTCCCCGACCATCCCCTATCCTCCCCCCCTCCCCATCCCCTCTCCGCC
TTTCACCCTTCCAATCCCCTCTATCCACTTCCCTCCCCTCCCCTCCCATT
CTTCCTCACCCATCTCTCTTCTTTCTCACTTATCCCCCCACTAATCCCCG
TACCATCCCCCGCCCCATTCACTCCATTCCCTACCCACTCTCACCCCACN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_j20.b1 MSMg01no169_j20.b1 CHROMAT_FILE:
MSMg01no169_j20.b1 PHD_FILE: MSMg01no169_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:21 2005
         (311 letters)



>mm_chr1_96675891_96676601
          Length = 711

 Score =  561 bits (290), Expect = e-164
 Identities = 299/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   tccatctcagtcttttaacacgcatcttatatcaaagtgaagttcagaaattgacacaag 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tccatctcagtcttttaacacgcatcttatatcaaagtgaagttcagaaattgacacaag 268

                                                                       
Query: 69  gctgtggcacatgaggtatttgcaacaatcttggatgagggttgttgggccaaaagattt 128
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gctgtggcacatgaggtgtttgcaacaatcttggatgagggttgttgggccaaaagattt 328

                                                                       
Query: 129 agtcagccagtatacctgggctttactcaagatacatatagatgtgatgtttacaggtta 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agtcagccagtatacctgggctttactcaagatacatatagatgtgatgtttacaggtta 388

                                                                       
Query: 189 gtgcttttaatcatagcataataattccagtaagtaaattgaccttattgcatttggagt 248
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 389 gtgcttttaatcatagcataataatttcagtaactaaattgaccttattgcatttggagt 448

                                                                       
Query: 249 atttgattcagtttccaaagtccttctcaggaaaagaaaatacctgtattattacactgt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atttgattcagtttccaaagtccttctcaggaaaagaaaatacctgtattattacactgt 508

             
Query: 309 ta 310
           ||
Sbjct: 509 ta 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)