BAC Information

Click to search

BAC

Clone NameMSMg01-169L03
Chromosome1 (Build37)
Map Location 172,694,475 - 172,694,758
singlet/doubletsinglet
Overlap geneAtf6
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneDusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169L03.T7 (MSMg01no169_l03.b1)MSMg01-169L03.TJ (MSMg01no169_l03.g1)
ACCAG366488AG366489
length783731
length of high quality
(start - end)
310 (102 - 411)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no169_l03.b1 PHD_FILE: MSMg01no169_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:27 2005CHROMAT_FILE: MSMg01no169_l03.g1 PHD_FILE: MSMg01no169_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTTCTTTAGTCTTTTTNCCACTTATTCTTTTTCCATCTTCCGCACTT
NNCCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCAGTTCTGAGCCCCATGTTTTAATGGGGTTATT
TGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAG
TTTCATGAGGTCCTATTTGTCAATTCTTGATTTTACAGCGCAAGCCATTG
CTGTTCTATTCAGGAATTTTTCCTCTGTGCCCATATCTTTGAGGCTTTTC
CCCACTTTCTCCTCTTTTTTTTCCCCCCCACTCTCCCTTTATGTGAAGTT
CCTTGATCCACTTATATTTGACCTCAAAAAAAAAAGATAGGAATGGATCG
ATTCGCATTCTTCTACATGATAACATCCAGTTGTGTTCGCCCCATTTGCT
GTAAATGCTGTCTTTCTTCCACTGCATGGATATAGCTCCCTTGTTGAACA
TATTGTGATTTTAGTTGTTGTGGTTTCATTTCCTGTTTTTTCAGCTTATC
CTCATTGCTTCTTACCTGTTTTGTTACTTGTTTCATCACCCCCCCTCCCT
TTTTTCCCCCTTTACTTTTGTATTAAAGACTCTTAGTACTCCCTCATAAT
TTTTCCCCCCCCCGCCCCTTCTTTTTCTTTCTG
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAATATGTAAGCAAATAGAAT
TCAATGAGTTAACCTAACATTTCCTCCAGGGGGAGAATTTTGTTCTGTGA
AGTTGAGAAAAGTTGATTTTCTTTTTTTTAGAATACACTGTAATTTTTTC
CCAACTAAAGATTATGTAAAGAACCAATATGGTTTCTAAATTTATATGTT
AAGATAACTTTATTTTGTCCATAAAAAATGTTCCTTACTAGGGCTAGGGA
GGTGGCTCAATGGTTAAGAGTACTTCTTATTCTTCCAGAAGACCTGAGTT
CTCTTACCAATTTTGATGGAACACCCGCTCACAACTGCCTGTACTTCAGC
TCCAGGGATCCAACATGTCCTTCTGGCACCTGAGGGTATACCCCGCACAT
GTGGCATGCATTCACACATACACTTGTAGTTAGAATTCTGGAATGTTGGT
TTCTTTAAAAAATAGAAATATAAGAATATGTTTTTGTTTTAATCCCAGGT
GTGGGGATGTGGCACTGCTTCAAAGCAGCTGACTATGATTTGCCTTGCTC
TCGAGCAGAGGCCTGGTTTTGCCAGCTGCAGATGGTTTCTGCGATGTGTG
TGATATGTGGGACTTTTCAGAGGGTCTATAAATGCGTAGAGCCCTGATAG
GTNGGGTGGATGGTTGCTGGTTGTTCGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_l03.g1 MSMg01no169_l03.g1 CHROMAT_FILE:
MSMg01no169_l03.g1 PHD_FILE: MSMg01no169_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:27 2005
         (287 letters)



>mm_chr1_172694345_172695031
          Length = 687

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaatatgtaagcaaatagaattcaatgagttaacctaacatttcctccagggggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cagaaatatgtaagcaaatagaattcaatgagttaacctaacatttcctccagggggaga 355

                                                                       
Query: 61  attttgttctgtgaagttgagaaaagttgattttcttttttttagaatacactgtaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 attttgttctgtgaagttgagaaaagttgattttcttttttttagaatacactgtaattt 295

                                                                       
Query: 121 tttcccaactaaagattatgtaaagaaccaatatggtttctaaatttatatgttaagata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tttcccaactaaagattatgtaaagaaccaatatggtttctaaatttatatgttaagata 235

                                                                       
Query: 181 actttattttgtccataaaaaatgttccttactagggctagggaggtggctcaatggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 actttattttgtccataaaaaatgttccttactagggctagggaggtggctcaatggtta 175

                                                       
Query: 241 agagtacttcttattcttccagaagacctgagttctcttaccaa 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 agagtacttcttattcttccagaagacctgagttctcttaccaa 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)