BAC Information

Click to search

BAC

Clone NameMSMg01-170A13
Chromosome1 (Build37)
Map Location 151,707,984 - 151,708,216
singlet/doubletsinglet
Overlap genePla2g4a
Upstream geneLOC100042792, LOC435647, LOC100042813
Downstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170A13.T7 (MSMg01no170_a13.b1)MSMg01-170A13.TJ (MSMg01no170_a13.g1)
ACCAG366731AG366732
length730734
length of high quality
(start - end)
314 (48 - 361)234 (127 - 360)
definitionCHROMAT_FILE: MSMg01no170_a13.b1 PHD_FILE: MSMg01no170_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:53 2005CHROMAT_FILE: MSMg01no170_a13.g1 PHD_FILE: MSMg01no170_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTCGGACAACCGGATCCTTCCACCGCAAAGCTTTTATTGCTT
CAACATAAGGGAGACCCCGAAACTGGAAAATGGCGCTGCTTATATAGCCC
GCAGCGTGACGTTTCAGCACCTGATGTGGCATGACAGCACCTGATTAGTT
GCTCGCCCATCACCCCATTACTACGCCCCGAGATGGGCAGTGACTAGGCG
TGAGTTCACTCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGGCGCA
GTGGAAGCCAGCGCCATCTTATTATGGCGATTGCTCACGGCACAGCTCTT
CACACTCACATATTTTATTTACCCCCCCCCCCCCATCTAATTTTTAAAGA
AAGAATAGAAAAAAAGACCCAGAAAAGAAAAGAAAAAAAGACTACGAAGA
TTCTCTTGATCCCACCTCCTCCTCTGGCCTCTTTCTTTTATCAGCCACAC
TTGCTTATTTGATTGACAACATTTCCCTGCTTTCTGCATTTCTTTATTCT
TCAGCTTTATGCCTACTTTCTGCTGCCTTGGTTCTGTCACATAGCGATGC
TCATCCCCCAGGGTCTACCCTTTACCCCCACTTAATCCTTCGCCCCCTGC
TTGATGTTGTCCTCTCTTCCTGACCCTCTCCTGTCTCTGCTTAGCCTAAA
CCCTCCCCTCCTCTGCTCTTCGATCCCTCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCGAAAATCAGTACGGGCGCCACCTCAGACAGGCCC
ATCTGTTGGAGTATGTATTTACCCCTGAGACGTTAAAAGCAAGGGAAAGG
TGTGATTGTGTTGCCTCTCATGTTCTATGCAACAGTCCTGTCTGCCTCTG
GACAGCCCCCATGCTGACACTTAAGGACTTAGAAGGTCATCAGTGCTTAG
AGACATAGAGGTGGGCTGGATGGACAATGCTCTCCCCTCCTCCGCTCACA
CTCTCCCAGAAGCTCTCGCTCTCTCACCTTTGGGTCCTTGAGCCTCGTCA
TCACTGTCGTTATTTTTTATTACTCACCACCGCTGCTTTGCTGTAATATT
TTCTATGGGAAGAAGACAAAATCATTGAGACATACAATAGAGATCAGATT
CACAAGCAAATTTACGGGGCAGATGAGGGAGTATTGGTGCAAGTCTTTAA
TTCCAGCTCGCAGGAGGTGGGGGCAGGCAGAACTCTCCGGGTTCAAGGCC
AGTTCCAAGCCAACCGGGGCTACGTGGTGGTCGCATTCTTTTTGAACTGT
GGAGAAGTGATCTGAGCAAAACTACAGGAGGAGAATTACTGTGTCTCCCT
GGAACTTTAGCCTTAGTGTTGTAAGTGGACACTTACCAGATTCGCTAATT
TAAAAAAAAAAATGTATCACTGAGTGAAATAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_a13.g1 MSMg01no170_a13.g1 CHROMAT_FILE:
MSMg01no170_a13.g1 PHD_FILE: MSMg01no170_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:53 2005
         (234 letters)



>mm_chr1_151707784_151708417
          Length = 634

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagacgttaaaagcaagggaaaggtgtgattgtgttgcctctcatgttctatgcaacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagacgttaaaagcaagggaaaggtgtgattgtgttgcctctcatgttctatgcaacagt 260

                                                                       
Query: 61  cctgtctgcctctggacagcccccatgctgacacttaaggacttagaaggtcatcagtgc 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 cctgtctgcctctggacagcccccatgctgacacttcaggacttagaaggtcatcagtgc 320

                                                                       
Query: 121 ttagagacatagaggtgggctggatggacaatgctctcccctcctccgctcacactctcc 180
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ttagagacatagaggtggactggatggacaatgctctcccctcctcccctcacactctcc 380

                                                                
Query: 181 cagaagctctcgctctctcacctttgggtccttgagcctcgtcatcactgtcg 233
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cagaagctctcgctctctcacctttgggtccttgagcctcatcatcactgtcg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)