BAC Information

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BAC

Clone NameMSMg01-170B11
Chromosome1 (Build37)
Map Location 134,677,639 - 134,852,500
singlet/doubletdoublet
Overlap geneLrrn2
Upstream gene4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc
Downstream geneMdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170B11.T7 (MSMg01no170_b11.b1)MSMg01-170B11.TJ (MSMg01no170_b11.g1)
ACCAG366770AG366771
length729707
length of high quality
(start - end)
308 (48 - 355)231 (127 - 357)
definitionCHROMAT_FILE: MSMg01no170_b11.b1 PHD_FILE: MSMg01no170_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:57 2005CHROMAT_FILE: MSMg01no170_b11.g1 PHD_FILE: MSMg01no170_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,677,639 - 134,677,941)(134,852,270 - 134,852,500)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCCAGGTCTTAAGCAAGCAGGAACAGACATGACCCTTGCCCA
CACTTGGAAAAAGAGAGCTAGTGAGTTTCTTGAACCAGCTCTCAAGTCTT
CTAGACTTTGGCCCCCAACTTCCCCTGCCTGCTCACCACCTCCCCAACCC
CCAGTCTACTCTCCAACTGAGCTCTGTACTGATGCTAAACAAATTTCTGT
GTGAAATCAATTCCAAACTTGCCCGGTCAAGCAGCAGACCTGGTGCATCC
AATCCTGATCCTGAGTGATTAGCCCTCTGTGCCTGCTCCTCCTGAGGCGT
AGGATTAAGTTGGTTCCGNATCCANCCCCATACTGGGTGTGAAGGNTTGA
GGGATACTGTGCATGCAAAACACAAGAAAGAACCACTGGCCATTTTCCCA
CTGTCCTCCTGAACCTCATCTCACTCTGATTCACCCTGCATGAGGCCTGG
AATATTCGCTCAAGCTTTGAACCTAACATTAGCCTCTTGTTGCCTCTTAG
CTTCCACTGAGTTTGACAGTGCAGTTGGAGATTTCCTCCTCACCCCTTCT
TCACCCTGGCCACACCCCTGTCCGTGGCCGTGACCCTCCCATGCTGCAGC
TCTCATTACATATCCCTCCTCCATAATTCCTGCTTTCCCTTCCTCCCTTG
AAGACCTTATTCTTGCCCCCAACTCTGCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTGGAAACTGGGTAGACAAGA
TGACCCACTTCACAAATGTTCACCCATCTTCATCCCCAATGACGCAGGGT
TTGTTTAGTCTGCTGAGGCACAGTGGCCCTGTTGACACAGCTGGGGACGG
AGGTGGCTGGGACTTAAGCACAAAGACTCACCAGGATATTGCCATTTTAA
AATGTTCAATATTCTGAAGCAGAGCCTACCTGGAACCCATGATTTGATGC
CACCAGCCAACTGATGATTTGATATCCCGGCCATGAGAGAGCTTCAATTT
GACCTTTTGAATANATCTCNTAGCGGAACCAGGCTCACCATCAACCAATG
ACTTTTATAGTGATGGGGGACCAAAGAAAAAATTTTATTTGCTTGCTTCT
TTGCCAAAGGTTAGATTCCTGATGAACTAGGAAGAGAGACCTTACTAAAG
CAGAGTTAAGATGTGCTGTAGTCAAGACTAATGACTAATATTGATCAAGA
GTCCAGAGACAGGTCTGGAAAGATGGCTCAGCAATTAAGAGCACACTGGC
TACTCTCCCAGAGGGCCTGGGTTCTATTCTGAGCACACACATGGTGATTT
GCAACCAGCTAAAACTAGTAACTCCATCTCCAGTGGATTCAGCAGCCTCT
TCTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_b11.b1 MSMg01no170_b11.b1 CHROMAT_FILE:
MSMg01no170_b11.b1 PHD_FILE: MSMg01no170_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:57 2005
         (308 letters)



>mm_chr1_134677435_134678142
          Length = 708

 Score =  547 bits (283), Expect = e-160
 Identities = 298/303 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccaggtcttaagcaagcaggaacagacatgacccttgcccacacttggaaaa 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccaggtcttaagcaagcaggaatagacatgacccttgcccacacttggaaaa 264

                                                                       
Query: 65  agagagctagtgagtttcttgaaccagctctcaagtcttctagactttggcccccaactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagagctagtgagtttcttgaaccagctctcaagtcttctagactttggcccccaactt 324

                                                                       
Query: 125 cccctgcctgctcaccacctccccaacccccagtctactctccaactgagctctgtactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccctgcctgctcaccacctccccaacccccagtctactctccaactgagctctgtactg 384

                                                                       
Query: 185 atgctaaacaaatttctgtgtgaaatcaattccaaacttgcccggtcaagcagcagacct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgctaaacaaatttctgtgtgaaatcaattccaaacttgcccggtcaagcagcagacct 444

                                                                       
Query: 245 ggtgcatccaatcctgatcctgagtgattagccctctgtgcctgctcctcctgaggcgta 304
           ||||| |||||||||||||||||||||  |||||||||||||||||||||||||||| ||
Sbjct: 445 ggtgcgtccaatcctgatcctgagtgagcagccctctgtgcctgctcctcctgaggcata 504

              
Query: 305 gga 307
           |||
Sbjct: 505 gga 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no170_b11.g1 MSMg01no170_b11.g1 CHROMAT_FILE:
MSMg01no170_b11.g1 PHD_FILE: MSMg01no170_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:57 2005
         (231 letters)



>mm_chr1_134852070_134852700
          Length = 631

 Score =  431 bits (223), Expect = e-125
 Identities = 229/231 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcatccccaatgacgcagggtttgtttagtctgctgaggcacagtggccctgttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tcttcatccccaatgacgcagggtttgtttagtctgctgaggcacagtggccctgttgac 372

                                                                       
Query: 61  acagctggggacggaggtggctgggacttaagcacaaagactcaccaggatattgccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acagctggggacggaggtggctgggacttaagcacaaagactcaccaggatattgccatt 312

                                                                       
Query: 121 ttaaaatgttcaatattctgaagcagagcctacctggaacccatgatttgatgccaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttaaaatgttcaatattctgaagcagagcctacctggaacccatgatttgatgccaccag 252

                                                              
Query: 181 ccaactgatgatttgatatcccggccatgagagagcttcaatttgaccttt 231
           |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 251 ccaactgatgatttgagatcctggccatgagagagcttcaatttgaccttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)