BAC Information

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BAC

Clone NameMSMg01-170I14
Chromosome1 (Build37)
Map Location 133,246,552 - 133,375,510
singlet/doubletdoublet
Overlap geneSrgap2, LOC100042826, LOC100042821
Upstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke
Downstream gene2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170I14.T7 (MSMg01no170_i14.b1)MSMg01-170I14.TJ (MSMg01no170_i14.g1)
ACCAG367070AG367071
length738827
length of high quality
(start - end)		318 (46 - 363)235 (130 - 364)
definitionCHROMAT_FILE: MSMg01no170_i14.b1 PHD_FILE: MSMg01no170_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:31 2005CHROMAT_FILE: MSMg01no170_i14.g1 PHD_FILE: MSMg01no170_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,375,196 - 133,375,510)(133,246,552 - 133,246,786)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGGGAGCTTAGGACAAAGGACAATCTGCTTGTGTCATTGACTA
GACTGGCATGTAGTAGACCATTAAAAACTAGTCTCTTGTTTGGGGTTTAT
GAGCCTGGGTTACCTGGGACATCCCATGTTACAATCCTAATTAAAACTTG
GTCTATTTACTTTGCTGTAATCTAGGAGTAGTAAGGAAAATAAAGGGTAA
ACCTTTCCTGTTTTATGTTTCCTTGGATCTGTGATTAAAGTATTAACTTT
GTTCACTATTTGCTAAGGAGAGTCCTGAGAAGAAGGGCTCGAAGCATGTA
TTTTGCTTCTTTATTTGATCTACCGNNACANANNCTGTTTTATAGACATT
ATCTTGTTTAATTCTCAGTATTGTAAAATCAATAATAGAGGTAGAAATTG
AGGTCAGAATTTGCCCAGGAGTCATGATCATGGATTTTCTACTATTGCAT
ACTGCACAATGCTTTATCTCATTACAGATGACAGTGTGGTCATTTCAGTA
AGAATACTCATGATTTAAGAGTGTCACTAAATGTTTATAACACACCTGAG
TATAATTATTCCATTTATACCTAGAACTCCTGACAGTCTCTATAAAGATG
TTTTGTGAGTATATTTGGCTGTCTCACTTTGAATCCCAATGACTCTGTTT
TAATACATTCTCTGCCCCCCTATCTCTTTTTTGTTACT

TCTATTTTTCCTTCTATCCCTACCCACTCCTTCTCTTTTCCCCTTTNNNN
GGTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTTCTGTTTTCTGGTTTGTC
TGGGGAATGCCATAACAACAAAATTCAACAATAATAATAATACTGCCTGC
TATGATTCTCTGAGGGTTCCTGTGGTTAGAAGTCACTACATAGCAAGCTT
TCCAGGCCAATGGAACAGCCAGGAGTCAAAAATCTGGAGTGCTGTACCAG
CAGTAAATTCACATATACTCAACTCTAGGTAGGTGGAAGAAGGAGAGAAC
AGAAGGTTGGTTGAGTCATGATTTTAACTTTCAGCGACCTGGGACAAGCC
TGAGTTGATTTTTTTTTAACCCACCCCCCCCCAATTATAAGTGTAATTGG
GAAGATTCTTATCATGCTCCTACGAATAAAAAAAACAAAAATGAGCAGAC
GACAATGAAAGACGCATTTGTACCCCCTTGCCCCACCGCCCCCACCCGTT
TCATCCCCCTCACCACCCCCCCCCTTTCACCTCCCCTCTTTCTCTTCCCC
CTCACCCCCTCCCACCCCTTTTTTTCTTTTTTTCTCCCCCCTTCTCACTC
CCTTCCACTCATCACACTCCATTTTTTTATTATTTCCCCTTCTTTTTCTA
CCCCTCATCACCTCCTCACCATACCACTTTTTTTTTTCACCCCCCCCCCC
CCCTCTCGCTCCATACTACTCTCATCCTTCACTTTCTACACACCGCGCCC
GAGCCACTTACCACTCCTTCTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_i14.b1 MSMg01no170_i14.b1 CHROMAT_FILE:
MSMg01no170_i14.b1 PHD_FILE: MSMg01no170_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:31 2005
         (318 letters)



>mm_chr1_133374993_133375710
          Length = 718

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgggagcttaggacaaaggacaatctgcttgtgtcattgactagactggca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattctttgggagcttaggacaaaggacaatctgcttgtgtcattgactagactggca 459

                                                                       
Query: 64  tgtagtagaccattaaaaactagtctcttgtttggggtttatgagcctgggttacctggg 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgtagtagaccattaaaaaccagtctcttgtttggggtttatgagcctgggttacctggg 399

                                                                       
Query: 124 acatcccatgttacaatcctaattaaaacttggtctatttactttgctgtaatctaggag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 acatcccatgttacaatcctaattaaaacttggtctatttactttgctgtaatctaggag 339

                                                                       
Query: 184 tagtaaggaaaataaagggtaaacctttcctgttttatgtttccttggatctgtgattaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tagtaaggaaaataaagggtaaacctttcctgttttatgtttccttggatctgtgattaa 279

                                                                       
Query: 244 agtattaactttgttcactatttgctaaggagagtcctgagaagaagggctcgaagcatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agtattaactttgttcactatttgctaaggagagtcctgagaagaagggctcgaagcatg 219

                          
Query: 304 tattttgcttcttta 318
           |||||||||||||||
Sbjct: 218 tattttgcttcttta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no170_i14.g1 MSMg01no170_i14.g1 CHROMAT_FILE:
MSMg01no170_i14.g1 PHD_FILE: MSMg01no170_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:31 2005
         (235 letters)



>mm_chr1_133246352_133246986
          Length = 635

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgttctgttttctggtttgtctggggaatgccataacaacaaaattcaacaataataata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cgttctgttttctggtttgtctggggaatgccataacaacaaaattcaacaacaataata 260

                                                                       
Query: 61  atactgcctgctatgattctctgagggttcctgtggttagaagtcactacatagcaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atactgcctgctatgattctctgagggttcctgtggttagaagtcactacatagcaagct 320

                                                                       
Query: 121 ttccaggccaatggaacagccaggagtcaaaaatctggagtgctgtaccagcagtaaatt 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccaggccaatggagcagccaggagtcaaaaatctggagtgctgtaccagcagtaaatt 380

                                                                  
Query: 181 cacatatactcaactctaggtaggtggaagaaggagagaacagaaggttggttga 235
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 cacatatactcaactctaggtaggtgggagaaggagagaacagaaggttggttga 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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