BAC Information

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BAC

Clone NameMSMg01-170M18
Chromosome1 (Build37)
Map Location 72,825,618 - 72,825,861
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a
Downstream geneIgfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170M18.T7 (MSMg01no170_m18.b1)MSMg01-170M18.TJ (MSMg01no170_m18.g1)
ACCAG367248AG367249
length708768
length of high quality
(start - end)
---244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no170_m18.b1 PHD_FILE: MSMg01no170_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:51 2005CHROMAT_FILE: MSMg01no170_m18.g1 PHD_FILE: MSMg01no170_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCAAACGACTCCTATAGTGCCGAACCGANGAANNNNNCNAATTAC
CAAGAGAAGGANANAAGNNGGANNAAGAGGGAGAAGGNAANNATTTTATN
CCCACCAGGAAGGGGGANGNGNNNGNGNNANGGNNANNANGAGGAANGGN
AAGNNGNNNNAGGNNNNAANANNNNNNNGGNAAAGNNAANNANNANANNN
GNNNNANAANANANANANANATTTTTTTGANANAGANANAGAANAGAGAG
ANATGGANANATGGANAANANATANAANANANGGGTTTTTTTGGTTTGAN
NAAANGGNAAGGAGGGGNAAAAAAAGATTGGATGGGTTCCCCCCCCCCCC
CACNGANGGAAGAAAAGGGAAAGAAGGGGAANNNNNNNAAAAAGGNGAAA
GNNAANNGGGGGGGGGGGGGAGANGAAGNNAAAGAAANNNNAAAAAAAAA
AGAAAAAGGAAGGNAAGGNNNNNAAGGAAGGNACAAGAAAGAAAANAAAA
AANGGAAGAGAAGGAGGAGAAGAAGGGAAGGANAAAAANGAGGAAAAGGG
AAGGNAGGGGAAAAAAAAGANAAGAAGGAAAAGGAAAGGAANAANNNAAA
AGAAGGGNAAGAAAAGTTTTTTTTTTTAATAGAGAAAATTTTGAATTTGT
TTTAAAGAATTGGATGGTTAAATAAGGTGTATTGTCCGAAAATTAATTTT
GTTAAAGT
ATCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGGGCAGGCCGAGAGGGA
GCTTGTGTTTATTCTCTTCAGGAATGAAGGGCCTGCTGGGTCTTGTTCAC
AGAGACACTGTGAGGAACCAGCTGAGATAAGGATGGCCACCTTCTTGCGG
GGGAGGGGTGGACTGAGGCCCGGGAGAGAGACAGGGCTAGGACTCTGACT
GGTATGCATTTTAGGAAGTAGACAGTTGAGCCAACATAATTTGAAAAAGC
ATTGTCTGAGGATGCCCTTCTACCTGAGCAGAGAGTGGAGGCTCCTTTCC
TCCACGCTCACTTTGGTTTTTTGTGACCCCCACCTCAGTATCCACTGGCA
AGCTCAAGGNCACAGCTCTGCTTCTCAAGAAAAAGAAAAAATGTGAAGAC
TTCCCCCAAACCGGCCATGCACAAAGGGATTCCATTACTGGGCTGCGAAT
GCAGCTGCCTGACAAGCTATTAGAGGCTTACCTCGCCCAGAAAGCCCCCG
TTTCAGCCTGCACACGGCTCCCCGCGCCCGCCCTTTTTGTTATCTGCCCA
CCCCCATTCCACACCCTCCACCCCCTCCCCCCCTCTTCTTTTGTTCCCCT
TTTTTTCTCCCCCCCCTCCCCCTCCCGTCCCTTTTTTTTTCTCCGCCCCA
ATCCCCTCCCCCTCCCCCTCCATCCTTTCACCACCCGCCCGTCCCACTCC
TCCCCCCCTCTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_m18.g1 MSMg01no170_m18.g1 CHROMAT_FILE:
MSMg01no170_m18.g1 PHD_FILE: MSMg01no170_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:51 2005
         (244 letters)



>mm_chr1_72825418_72826061
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgggcaggccgagagggagcttgtgtttattctcttcaggaatgaagggcctgctgg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgggcaggctgagagggagcttgtgtttattctcttcaggaatgaagggcctgctgg 260

                                                                       
Query: 61  gtcttgttcacagagacactgtgaggaaccagctgagataaggatggccaccttcttgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gtcttgttcacagagacactgtgaggaaccagctgagataaggatggccaccttctttcg 320

                                                                       
Query: 121 ggggaggggtggactgaggcccgggagagagacagggctaggactctgactggtatgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggaggggtggactgaggcccgggagagagacagggctaggactctgactggtatgcat 380

                                                                       
Query: 181 tttaggaagtagacagttgagccaacataatttgaaaaagcattgtctgaggatgccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaggaagtagacagttgagccaacataatttgaaaaagcattgtctgaggatgccctt 440

               
Query: 241 ctac 244
           ||||
Sbjct: 441 ctac 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)