BAC Information

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BAC

Clone NameMSMg01-170M21
Chromosome1 (Build37)
Map Location 149,781,988 - 149,782,275
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170M21.T7 (MSMg01no170_m21.b1)MSMg01-170M21.TJ (MSMg01no170_m21.g1)
ACCAG367254AG367255
length725722
length of high quality
(start - end)
320 (46 - 365)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no170_m21.b1 PHD_FILE: MSMg01no170_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:51 2005CHROMAT_FILE: MSMg01no170_m21.g1 PHD_FILE: MSMg01no170_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAATTTGGTTTCTTTAAAAAATTACAGAAATATTGTAAGAATG
AATTTTCTTTTTAATCCCAAGTCTGAGATATGGGGCTACTTCCAATTGTT
CACAGCAGCTGACTATAATTTGCTTCAAGCTCTAGCAAAGGCATGATTTT
GCCAGCTGTAGATATTTTCTGCAATTTGGTACTTGGAATTCTATGGGGAT
TTTACAGAGGGTATATCAATGCTTGAAAGGATGGGTTGTGAGTTGCTGTG
AATAATTGTCAGTCATAATTTGTTAAGTATGCACAAAGAAAAAACAACAA
GAAGAAAAATTTAGATATTTTTTTGTTGCACCACCACACTTGTGCCAAAG
AGCTGATGCCCCTAATTAACAGGAGGTAATCTAATAATAATTTTACCTCT
TTTCTGGCTCCTGGCATTATTCAGGAATTTCTTTCCTTTCCCCTCTATCT
TATTTTATTTTTTCTAGTTTTAAGGAGTTGAAAGGGTGAAAGTAAAGGGT
TAAAGAAGTGTGGAAGAACGAACCCACAAAGTAGACAATTTTTATCCTAC
TATTTTGCTGAGTGTGTATTCAGTCATATAAGTTTTCTTGTCCTTAATGC
CCTTTATGCTTAGACTTATATCACCTGTAAATAAGGAAACAGCTCTTGAA
ATAAGGAAACTGCTTCCTCTGTTCN
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCACTTAAGTAAACTTTTGCTCTTTC
ACATACATAACTATTTGTCTTCTAGATTATGATGAATTTTGACTTCTTAA
TTTCTTGCTTTCTTTATGTTAGATATTGTGTATACCTTCATCTCTTCTCT
AATGTCTTGTTACATATTTTGTTGTGTCAGGCCAAAGAACCAACATCAAA
TAATAGTTTACTGTTTCACCAAAACTTCTTTTTATGAATGAGGACTATGG
GAGACATTCAAATATCAAATATACATAATTTTACAAACTCTTATTTTTGT
CCTTAGTTCTATTTTTTTAAAAGCCCCCCGCCCCTGCCACAGGACATGTT
TATACATTTGCTTGTTTGCACATTTTTAATAAATATTGATATTTTCTTTA
GGTAATGTACAGTCAATTTTGAAAATGTAAGTGAATATTGTGACTGCAAA
AATAATATTGTTACTCTAGCTTGTTTCTTCAGAACGTTGCTTGAAAAATT
GTTTTCCAGCCTTTCATTCTGAGGTAGTGACTGTCTTTTTTCCCTGAGGT
GGGTTTCCTCTAAGCAGCAAAATTTTTAGTCCTGTTTGTGTAGCCAGCCT
GTTAATCTATGTCTTTTTATTGGTGAATTGAGTCCAGTGATATTAAGAGA
TATTAAGGAAAAGTAACTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_m21.g1 MSMg01no170_m21.g1 CHROMAT_FILE:
MSMg01no170_m21.g1 PHD_FILE: MSMg01no170_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:51 2005
         (289 letters)



>mm_chr1_149781788_149782476
          Length = 689

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcacttaagtaaacttttgctctttcacatacataactatttgtcttctagattatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgcacttaagtaaacttttgctctttcacatacataactatttgtcttctagattatgat 429

                                                                       
Query: 61  gaattttgacttcttaatttcttgctttctttatgttagatattgtgtataccttcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaattttgacttcttaatttcttgctttctttatgttagatattgtgtataccttcatct 369

                                                                       
Query: 121 cttctctaatgtcttgttacatattttgttgtgtcaggccaaagaaccaacatcaaataa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 368 cttctctaatgtcttgttacatattttgttgtttcaggccaaagaaccaacatcaaataa 309

                                                                       
Query: 181 tagtttactgtttcaccaaaacttctttttatgaatgaggactatgggagacattcaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tagtttactgtttcaccaaaacttctttttatgaatgaggactatgggagacattcaaat 249

                                                           
Query: 241 atcaaatatacataattttacaaactcttatttttgtccttagttcta 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atcaaatatacataattttacaaactcttatttttgtccttagttcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)