Query= MSMg01no170_n08.b1 MSMg01no170_n08.b1 CHROMAT_FILE:
MSMg01no170_n08.b1 PHD_FILE: MSMg01no170_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:54 2005
(312 letters)
>mm_chr1_165019998_165020710
Length = 713
Score = 567 bits (293), Expect = e-166
Identities = 305/309 (98%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 5 gaattccaatggtttttcttgagctgttaagtggaaagaacaacacttatttcagccctt 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatggtttttcttgagcggttaagtggaaagaacaacacttatttcagccctt 264
Query: 65 gattgctacattgagtcctgtttttttttt-cctcatggttatttttaataaaggaactt 123
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 gattgctacattgagtcctgtttttttttttcctcatggttatttttaataaaggaactt 324
Query: 124 attatgttttagagtctcttttcaaaattctaccttttccataacactgtgaattttttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attatgttttagagtctcttttcaaaattctaccttttccataacactgtgaattttttg 384
Query: 184 tttgtttgcattcctgggttctcttgggtatttctttgcacttgttatttatttctacct 243
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgcttgcattcctgggttctcttgggtatttctttgcacttgttatttatttctacct 444
Query: 244 tgtaggatgattacaagtctctatgtcataaaaggttggaagtgttgcatgttcattcca 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tgtaggatgattacaagtctctatgtcataaaaggctggaagtgttgcatgttcattcca 504
Query: 304 ttattaacg 312
|||||||||
Sbjct: 505 ttattaacg 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space: 213312
Effective search space used: 213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no170_n08.g1 MSMg01no170_n08.g1 CHROMAT_FILE:
MSMg01no170_n08.g1 PHD_FILE: MSMg01no170_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:54 2005
(283 letters)
>mm_chr1_165187938_165188621
Length = 684
Score = 480 bits (248), Expect = e-140
Identities = 271/284 (95%), Gaps = 10/284 (3%)
Strand = Plus / Minus
Query: 1 cacagatacagaggtttaactctaaaactcattgcctgtgggagaaggataacactgcag 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 363 cacagatacagaggtttaactctaaaactcattgcctgtggaagaaggataacactgcag 304
Query: 61 gatttctatga-ttttaggaaggggtctagactcatcttgtatttttcttgagagggcat 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gatttctatgatttttaggaaggggtctagactcatcttgtatttttcttgagagggcat 244
Query: 120 tatatagtaaaaagatcaaccaaagttttatgcatgtaacctattgttgttgttgttgtt 179
||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 243 tatatagtaaaaagatcaaccaaagttttattcatgtaaccta---------ttgttgtt 193
Query: 180 gttgttgttgttcctctccctcttgacgtctttctgccctcctaacaatcttccaggtgt 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 192 gttgttgttgttcctctccctcttgacatctttctgccctcctaacaatcttccaggtgt 133
Query: 240 ggtttcagaaccgaagagccaagttccgcaggaatgagcgagcc 283
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggtttcagaaccgaagagccaagttccgcaggaatgagcgagcc 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space: 184950
Effective search space used: 184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
