BAC Information

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BAC

Clone NameMSMg01-171C23
Chromosome1 (Build37)
Map Location 10,555,948 - 10,556,239
singlet/doubletsinglet
Overlap geneCpa6
Upstream geneAdhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
Downstream geneLOC433271, C030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171C23.T7 (MSMg01no171_c23.b1)MSMg01-171C23.TJ (MSMg01no171_c23.g1)
ACCAG367506AG367507
length741764
length of high quality
(start - end)
281 (46 - 326)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no171_c23.b1 PHD_FILE: MSMg01no171_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:21 2005CHROMAT_FILE: MSMg01no171_c23.g1 PHD_FILE: MSMg01no171_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGATGGTTTAATATGTGGAAATCCATCAATGTTTTTGTTTGTT
TGTTTGTTTGTTTTTTCTTTCTTTCCCCTTTTTTTTTTTTTTTTTTTTCG
AGACAGGGTTTCGCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAG
AGCAGGCTGGCCTCGAACTCAGAAATCCACCTACCTCTGCCTCCCAAGTG
CTGGGATTAAAGGCATGAGCCACCACTGCCCCAGGAAATCCATCAGTATA
ATCCACTATATAAATAAACTCAAAGATTTTTTCCACATGATCATCTTGTT
AGATGCTGAGAAATTAGNGTACATCAAANACCANNACCTCATAATAAAAG
TTTTGGAAAGATTAGGATTCCCCCCCCCAANCCTAAAAAAAAANGGCCGG
GGGCGGGCGAAATGGAAAGAAACTTGAAGCAATCCCACTAAAATCAAGGA
CTAGACAAGGCTGCCCCTCACTCCCTACCTATGCAATATAGCATTTGAAG
TCCCTGCCAGAACAATTTGACCAAAAATGGAGATCAAGGGGACACAAATT
GTGACAGCACAAACCCACATTCTCCTTTCTGCTGCACGCTTGCCCGTCAC
TATGATTCCATCTNTAAAACTTTTTCCTCACAATTCCCTACCATCTTTAC
TGTTCCCAGTCCGCGACTTGTTCTNTACTCGTTTCTCCTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTAAATCAATTCATTCCTTAAAGA
AGCTTTCATGAAACAATTGGTTCTACCCCCATGACACCTTCTGTTTAAAA
GAACTTTGTGTCAAAGAAATAACCATCTACTAGTGAACACCAAACCTCAT
GGAGAGAGGCTCTCAAGTCTTATACGCTATGACATGAAGGAGGAAGGAAT
GTAGCCTGACATTTAATACCAAAGTAAAGAGCAAGAGTGGAGGGGCACAA
TCTGTAGATTTCTGAACGCACTTCCAGGCAGAGCAGGACAGGTTCTATTC
TGGGGGAATAGAAAAGTTTTTTTGAAACACCCTACCTCGACTCTAATCTG
TCTAGCCTTGTGAGATCTTTCAAGGGATTGAAGGATCATGAAAACTCACA
CAATAAAACTTCATGTAGTCACATCCACTTAGGTCAAGAAACAAAACCTG
AGCAGAAAAGCTTTTGTTGGTTTTTGTTTGTTTGTTTGTTTTGTTTGTCT
TGTCTGNCTNNCCCCCCCTCTTTCTCTCTTTTTNTCCCTTTTCCCCCTTT
TTTCCTCCTTTTTTCCCCCTTTTCTTTCTCTCCCTNCTCTCCTCCTTTCT
CCTTCTCTTTTTTCCTCTTCTCTCCTTTCCTTTTTCTCTTCCTCTCCTTC
TTTCCTCCTTTCCTCCCCCTTTTTTCCCTCCCTTTTTCTCTTTTTTTTTT
TTCCACCCTCTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_c23.g1 MSMg01no171_c23.g1 CHROMAT_FILE:
MSMg01no171_c23.g1 PHD_FILE: MSMg01no171_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:21 2005
         (292 letters)



>mm_chr1_10555748_10556439
          Length = 692

 Score =  526 bits (272), Expect = e-154
 Identities = 287/296 (96%), Gaps = 8/296 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtaaatcaattcattccttaaagaagctttcatgaaacaattggttcta----ccccc 56
           ||||||||||||||||||||||||||||||||||||||||||||| |||||    |    
Sbjct: 201 ctgtaaatcaattcattccttaaagaagctttcatgaaacaattgtttctagaagc---- 256

                                                                       
Query: 57  atgacaccttctgtttaaaagaactttgtgtcaaagaaataaccatctactagtgaacac 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atgacaccttctgtttaaaagaactttgtgtcaaagaaataaccatctactagtgaacac 316

                                                                       
Query: 117 caaacctcatggagagaggctctcaagtcttatacgctatgacatgaaggaggaaggaat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caaacctcatggagagaggctctcaagtcttatacgctatgacatgaaggaggaaggaat 376

                                                                       
Query: 177 gtagcctgacatttaataccaaagtaaagagcaagagtggaggggcacaatctgtagatt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtagcctgacatttaataccaaagtaaagagcaagagtggaggggcacaatctgtagatt 436

                                                                   
Query: 237 tctgaacgcacttccaggcagagcaggacaggttctattctgggggaatagaaaag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tctgaacgcacttccaggcagagcaggacaggttctattctgggggaatagaaaag 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)