BAC Information

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BAC

Clone NameMSMg01-171F02
Chromosome1 (Build37)
Map Location 104,242,039 - 104,242,354
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171F02.T7 (MSMg01no171_f02.b1)MSMg01-171F02.TJ (MSMg01no171_f02.g1)
ACCAG367602AG367603
length722738
length of high quality
(start - end)
320 (48 - 367)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no171_f02.b1 PHD_FILE: MSMg01no171_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:30 2005CHROMAT_FILE: MSMg01no171_f02.g1 PHD_FILE: MSMg01no171_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGAAGAGATGGCAAGTTGCCTCCATGAGCAAGACAACTTTT
TGCTCAAACCTGAGAACTTGAGTTTTATCTTGGAACATGCAGTGAGAGAA
GGGAAGGGTTTCACAGTTTTGCCTGACTTCTATACATGCATTGTAGCAAA
CACATGCCTGTACTAAGTCTGCTCACACATGATAGAAATAAAGTAATAAA
TCAATGACACATACATGTAGTTACTTACTGTAGTCCACATACTAATCAGA
CACTTTGCACTGAGCTCTAATACAAACCCTGTATGCTTTTAGCTTCAAAA
TCCAGAAATTACCCCTTTCTTCCCACCCCCCGCATAAAAAACTTGAAACA
CAAAAGAAAACATTGCACAGGTACAAAATACATATTAGGCATCTCACTGG
AAGGAGTCTATGTGAAACAAGATCAAGGATGGCTTTTAGCAAGAGGATGG
GCCACAGTCTTTTTCCCACAATCACCATTGTCTTAGGGTTTTATTGCTGT
AAAGAGATATAATGATCAAGGCAACGCTTTCAAAGGACAATGTTTAATTG
GTGTTGGCTAAAGTTTCAGGTGTTCATTCCACTATCATCATCATGGGAAG
CAAAGCAGTGTGCAAACATAACTCCCAGCAGAGAAGCTAGGAGTTGTTAA
TCTTGATCTGAATTCAGACAAG
GAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTAATACCGGAGGATCC
AGCAATACCTCTTTTTTTAAGACGCCCCCCCCGCCCAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATATATAATAAAAAGAAGCTGGAAAG
AACTGAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TATACAATGGAGTACTACTCAGCTATTATAAAGAATGAATTTATGAAATT
CCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACAC
ATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAAATTAG
CCCAAAATCTAGGATTTCCCAGATATTATAGACCATTTCTAAACTCCTGT
AACTCAAGATAAATGATTATTGAATTGTGTACACTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_f02.b1 MSMg01no171_f02.b1 CHROMAT_FILE:
MSMg01no171_f02.b1 PHD_FILE: MSMg01no171_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:30 2005
         (320 letters)



>mm_chr1_104241835_104242554
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgaagagatggcaagttgcctccatgagcaagacaactttttgctcaaacct 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcattgaagagatggcaagttgcctccatgaccaagacaactttttgctcaaacct 264

                                                                       
Query: 65  gagaacttgagttttatcttggaacatgcagtgagagaagggaagggtttcacagttttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagaacttgagttttatcttggaacatgcagtgagagaagggaagggtttcacagttttg 324

                                                                       
Query: 125 cctgacttctatacatgcattgtagcaaacacatgcctgtactaagtctgctcacacatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgacttctatacatgcattgtagcaaacacatgcctgtactaagtctgctcacacatg 384

                                                                       
Query: 185 atagaaataaagtaataaatcaatgacacatacatgtagttacttactgtagtccacata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagaaataaagtaataaatcaatgacacatacatgtagttacttactgtagtccacata 444

                                                                       
Query: 245 ctaatcagacactttgcactgagctctaatacaaaccctgtatgcttttagcttcaaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctaatcagacactttgcactgagctctaatacaaaccctgtatgcttttagcttcaaaat 504

                           
Query: 305 ccagaaattacccctt 320
           ||||||||||||||||
Sbjct: 505 ccagaaattacccctt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)