TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCAGATCTTTGTTTTTAATCATATGGCTCTTCAAAGTTATTTCTC
GTTATCCAGATTTAATAGCTTGGATTTATGTGAGGTCTTAAGTGAAAAAG
ATGACCACAAATCTTGAACATAAACTATGGCCTGTGTAATTAGAATAGCC
CGGCCCCATGCAGCCTCCATAGTGGCCCCACCTGCACTTGGGGCACTGAC
CCCAGATGTGCTCTTCCATGACTACCTCCCATGTCAGAACTCTAGGGACA
GCTTTATGCATTCATTCAGAATTTGCTATTCAGGGCTGGAGAGATGGCTC
AAGAGTTTATTTTTTTTCCCCCACCTCTACTCTTCCAGAGGAACCCGAGT
TCAACTCTTAGCACCAGTCAGTCATTTAACAACCATCTCTCACTCCAATT
GCCCTCTTCTGGCCTCCGAGCGTAATAGGCACATATGTGATGTACATATA
TATACATAGGCAAAATACCCATGCACATAGACTATAAATCTTTATATTAA
AAATTGCTATTTGTGAAACAGCTGTATACAGGTGCAAGTCTGTGAGAATG
CCCTGCCTGCTAAGGTCGGGGTGCACACCTAAGATTAATTGTCTTCTTTT
CTAGTAAGGATGTGAGGCTGCCTCCTGGGCTTCACTACTCTCTGTNCGTG
GAAGCTGACGCACTAAGACATGCCAAA

TACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAATATATGTATGTTTGGGCAACT
TAATGGAAGGGACTTGCTTTCTTTTCATAACCCAATGGGGATTTTTCAAT
TCCACGAAGAAAGCTTAAGCAAATATCAAATTATAAGAGCAGGAAAAAAG
GTCCCAGAAATGGTACCATTCTGAGATGACCATTTTTAACACTCTAGTCT
TTGTTTTACCTCTTTGCATATGATACTTTACACACCTTAGGTATGTACAA
ATGTTGCCATTTTTTTCATTGATTTTCTCCCCTATTTCCCTGTGTGCGGN
ACCCGGTGTGAGTACATGCCCGGNGCGANACCCCAGAAAGAGTGTGNGNA
TGGGGAGGNNAGCAGCCCAAGAAAAAAAAAAAAAAATGCGGTTGGGGGTG
CAACGCATGATCTCTCATACCATTTCGAGCTCCCGATTGTGCTTACTCTG
GTTTTGTTTGCGAGTATTTATATTTTCCCCTTCTGTTATTCGTATTCTCT
CAGCATCCTTATTTTCGTTCTTTATATGCGTTTTTCTCCACCTTATCCCG
ATTTGTTTCTTTATTATTTTTCTTTTTCGTCCGTGTTTCCTGCTTTCTTT
AGATTTTATCTTTTTACCTCTCCCCCTTTTTGCCTCCCCTTTTCCCCCTT
TTATCACCCCCGTTGTGTCTCATCTTCCTCACTTTTTATGCCCGTTACT

Query= MSMg01no171_f04.b1 MSMg01no171_f04.b1 CHROMAT_FILE:
MSMg01no171_f04.b1 PHD_FILE: MSMg01no171_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:31 2005
         (314 letters)



>mm_chr1_158254295_158255008
          Length = 714

 Score =  223 bits (115), Expect = 2e-62
 Identities = 118/119 (99%)
 Strand = Plus / Minus

                                                                       
Query: 78  ggatttatgtgaggtcttaagtgaaaaagatgaccacaaatcttgaacataaactatggc 137
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 396 ggatttatgtgaggtcttaagtgagaaagatgaccacaaatcttgaacataaactatggc 337

                                                                      
Query: 138 ctgtgtaattagaatagcccggccccatgcagcctccatagtggccccacctgcacttg 196
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctgtgtaattagaatagcccggccccatgcagcctccatagtggccccacctgcacttg 278



 Score =  105 bits (54), Expect = 5e-27
 Identities = 57/58 (98%)
 Strand = Plus / Plus

                                                                     
Query: 257 gctttatgcattcattcagaatttgctattcagggctggagagatggctcaagagttt 314
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gctttatccattcattcagaatttgctattcagggctggagagatggctcaagagttt 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no171_f04.g1 MSMg01no171_f04.g1 CHROMAT_FILE:
MSMg01no171_f04.g1 PHD_FILE: MSMg01no171_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:31 2005
         (274 letters)



>mm_chr1_158411173_158411846
          Length = 674

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatatatgtatgtttgggcaacttaatggaagggacttgctttcttttcataacccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttaatatatgtatgtttgggcaacttaatggaagggacttgctttcttttcataacccaa 390

                                                                       
Query: 61  tggggatttttcaattccacgaagaaagcttaagcaaatatcaaattataagagcaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tggggatttttcaattccacgaagaaagcttaagcaaatatcaaattataagagcaggaa 330

                                                                       
Query: 121 aaaaggtcccagaaatggtaccattctgagatgaccatttttaacactctagtctttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaaaggtcccagaaatggtaccattctgagatgaccatttttaacactctagtctttgtt 270

                                                                       
Query: 181 ttacctctttgcatatgatactttacacaccttaggtatgtacaaatgttgccatttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttacctctttgcatatgatactttacacaccttaggtatgtacaaatgttgccatttttt 210

                    
Query: 241 tcattgatt 249
           |||||||||
Sbjct: 209 tcattgatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)