BAC Information

Click to search

BAC

Clone NameMSMg01-172A08
Chromosome1 (Build37)
Map Location 149,562,479 - 149,562,775
singlet/doubletsinglet
Overlap genenone
Upstream geneB830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172A08.T7 (MSMg01no172_a08.b1)MSMg01-172A08.TJ (MSMg01no172_a08.g1)
ACCAG368066AG368067
length706709
length of high quality
(start - end)
314 (51 - 364)289 (80 - 368)
definitionCHROMAT_FILE: MSMg01no172_a08.b1 PHD_FILE: MSMg01no172_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:23 2005CHROMAT_FILE: MSMg01no172_a08.g1 PHD_FILE: MSMg01no172_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCGCAACAGAAGAATCTTTAATGGCTGAGAAACACTTAAAAA
ATGCTCAAAATCCATAGTCATCAGGGAAATGCAAATTAAACGACTCTGAA
ATTTCACATTACACTCATCAAAATAGCTGATTTCAAAAACTCAAAGGTAC
AAAATTACTGGCAAGGATGTGGAGCAATAGGGACAATCCTCCTTTGTTTG
TGGGAATGCAAACTTGGACAACCACTATGGAAATCAATTTTGCAGTTTCT
CAGAAATGTAGTAATATTTCTACCCCATGTCCCCACTTTACCATTTCTGG
GTATATAGACAAAATTGAATCCCTTTTTTTCATGACCACACTTGCCAAAA
TGTGATCTGCCTATAAAATGTGCACAAACAAAAATGAAACACAGGCAAAA
GGAATGGCCAATCAATGACTGCCCCAAACTGATACCCATCCCATAGGCAA
GAACCAATCCTTGATACTAGTAATAATACTCTTTTGTGCTTGCAGACAGA
AGCCTAGCATATCTGTCCTTTGAGAGGCTCCACTCAGTACTCACAGGTAT
GTTCATAGCTGCTTTATTTGTAACAACTAGAACATGGAAATAACCCAGAT
GTCCCTTATCTGAAGAAATGATAAAGATTATGTGGTTCATGGTACACTAC
TCAGTT
CCTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAAACTTCTAAGGGACATT
GATATACTTTATGTTAAATCTTTAGAAATAAACCTTTATTGAAATGTGGT
CATAATAATATTTCAAGAACTACACTACTAATCACATCTGTGATGTTTGA
GTTTTACAAAGAGATTAATGTCTACATCAAGCAAATGTAAACAAATAAAC
AAAGATCAATATAAAAAGCAATATTCTACATAATGTATAAAAGAAAACCT
AAAACTTTGGAAGATATACCATATATGTGTGTGTGTGTGTATTATATATG
TATGTGTATATATAATTTATTTTACATATCTATCCCCATAGTGCTACAAG
GNAACACCATTACTGAACCCTAAACAAAAAAAATAATAGTTCACTGCCAG
GAATGAGTTTTGTCCTTTGGAGTTGCTAATCAGTAACTTCTCATATATCC
ACTATCCATTACACACTAATTATCATTGCCTTTGTTTATACTCCAGACTT
TATGTATACATTCTAATTCTGCACTGATTGCATGAAACAACATATCACAT
CATAGTTGCCATATCCCTGTAATTAATATTCTCTACCGCCTTATTGCGCA
TTATGCTGAATGTCGTCATGTCTCCTACCCCTATTACGCCTGGACTTTTA
TTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_a08.g1 MSMg01no172_a08.g1 CHROMAT_FILE:
MSMg01no172_a08.g1 PHD_FILE: MSMg01no172_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:23 2005
         (289 letters)



>mm_chr1_149562337_149563022
          Length = 686

 Score =  507 bits (262), Expect = e-148
 Identities = 283/300 (94%), Gaps = 17/300 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaaacttctaagggacattgatatactttatgttaaatctttagaaataaacctttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggaaacttctaagggacattgatatactttatgttaaatctttagaaataaacctttat 380

                                                                       
Query: 61  tgaaatgtggtcataataatatttcaagaactacactactaatcacatctgtgatgtttg 120
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgaaatgtggtc---ataatatttcaagaactacactactaatcacatctgtgatgtttg 323

                                                                       
Query: 121 agttttacaaagagattaatgtctacatcaagcaaatgtaaacaaataaacaaagatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agttttacaaagagattaatgtctacatcaagcaaatgtaaacaaataaacaaagatcaa 263

                                                                       
Query: 181 tataaaaagcaatattctacataatgtataaaagaaaacctaaaactttggaagatatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tataaaaagcaatattctacataatgtataaaagaaaacctaaaactttggaagatatac 203

                                                                       
Query: 241 catatat--------------gtgtgtgtgtgtgtattatatatgtatgtgtatatataa 286
           |||||||              |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 catatatatgtgtgtgtgtgtgtgtgtgtgtgtgtattatatatgtatgtgtatatataa 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 686
Length adjustment: 9
Effective length of query: 280
Effective length of database: 677
Effective search space:   189560
Effective search space used:   189560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)