MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-172B20
Chromosome	1 (Build37)
Map Location	138,930,898 - 139,097,074
singlet/doublet	doublet
Overlap gene	LOC100042567
Upstream gene	Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3
Downstream gene	LOC100043143, Ptprc
Link	Open Mouse BAC browser

Click to get alignment info.

name	Tmem9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66241 MGI:1913491
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ascl5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226439 MGI:2685043
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	Cacna1s (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12292 MGI:88294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kif21b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16565 MGI:109234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310006M14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76422 MGI:1923672
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein

name	5730559C18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67313 MGI:1921579
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042513 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042513
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Gpr25 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:383563 MGI:2686146
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins

name	Camsap1l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67886 MGI:1922434
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9230116N13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320054 MGI:2443255
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Ddx59 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67997 MGI:1915247
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Kif14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381293 MGI:1098226
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp281 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226442 MGI:3029290
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667686 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667686
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 5 Proteins pseudo : _no_value

name	EG623818 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:623818 MGI:3645105
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 151 ESTs, 5 Proteins

name	Nr5a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26424 MGI:1346834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnu7-ps3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19869 MGI:105101
definition	note : U7 small nuclear RNA, pseudogene 3 pseudo : _no_value

name	LOC100042567 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042567
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC100043143 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043143
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Ptprc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19264 MGI:97810
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981292 GeneID:66241 MGI:1913491
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 9 transcript_id : NM_025439.2

name	Cacna1s (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486621 GeneID:12292 MGI:88294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium channel, voltage-dependent, L type, alpha 1S subunit transcript_id : NM_001081023.1

name	Kif21b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86990453 GeneID:16565 MGI:109234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinesin family member 21B transcript_id : NM_001039472.1

name	5730559C18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51571944 GeneID:67313 MGI:1921579
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730559C18 gene transcript_id : NM_028872.2

name	Gpr25 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363979 GeneID:383563 MGI:2686146
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : G protein-coupled receptor 25 transcript_id : XM_357126.3

name	Camsap1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486888 GeneID:67886 MGI:1922434
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calmodulin regulated spectrin-associated protein 1-like 1 transcript_id : NM_001081360.1

name	9230116N13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149234277 GeneID:320054 MGI:2443255
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA 9230116N13 gene transcript_id : XM_001478397.1

name	Ddx59 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362902 GeneID:67997 MGI:1915247
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 transcript_id : NM_026500.2

name	Ddx59 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349852 GeneID:67997 MGI:1915247
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 transcript_id : NM_178052.3

name	Kif14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486926 GeneID:381293 MGI:1098226
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinesin family member 14 transcript_id : NM_001081258.1

name	Zfp281 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803475 GeneID:226442 MGI:3029290
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 281 transcript_id : NM_177643.3

name	EG623818 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149234279 GeneID:623818 MGI:3645105
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 151 ESTs, 5 Proteins product : predicted gene, EG623818 transcript_id : XM_888318.3

name	Nr5a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14010846 GeneID:26424 MGI:1346834
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 5, group A, member 2 transcript_id : NM_030676.1

name	LOC100043143 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234320 GeneID:100043143
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100043143 transcript_id : XM_001480013.1

name	Ptprc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326511 GeneID:19264 MGI:97810
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, receptor type, C transcript_id : NM_011210.2

name	Cacna1s (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486622 GeneID:12292 MGI:88294
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0030315 - T-tubule [Evidence IDA]; GO:0005891 - voltage-gated calcium channel complex [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005245 - voltage-gated calcium channel activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : dihydropyridine receptor alpha 1S; muscle dysgenesis; DHPR alpha1s product : calcium channel, voltage-dependent, L type, alpha 1S subunit protein_id : NP_001074492.1

name	Kif21b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86990454 CCDS:CCDS15324.1 GeneID:16565 MGI:109234
definition	GO_component : GO:0005871 - kinesin complex [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005875 - microtubule associated complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA]; GO:0007017 - microtubule-based process [Evidence IEA] codon_start : 1 note : N-5 kinesin product : kinesin family member 21B protein_id : NP_001034561.1

name	5730559C18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51571945 CCDS:CCDS15325.1 GeneID:67313 MGI:1921579
definition	codon_start : 1 product : hypothetical protein LOC67313 protein_id : NP_083148.2

name	Gpr25 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38073371 GeneID:383563 MGI:2686146
definition	codon_start : 1 product : similar to putative G protein-coupled receptor protein_id : XP_357126.1

name	Camsap1l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486889 GeneID:67886 MGI:1922434
definition	codon_start : 1 product : calmodulin regulated spectrin-associated protein 1-like 1 protein_id : NP_001074829.1

name	9230116N13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149234278 GeneID:320054 MGI:2443255
definition	codon_start : 1 product : hypothetical protein LOC320054 protein_id : XP_001478447.1

name	Ddx59 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385988 CCDS:CCDS15326.1 GeneID:67997 MGI:1915247
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 isoform 1 protein_id : NP_080776.1

name	Ddx59 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017343 GeneID:67997 MGI:1915247
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 isoform 2 protein_id : NP_835153.1

name	Kif14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486927 GeneID:381293 MGI:1098226
definition	GO_component : GO:0005871 - kinesin complex [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005875 - microtubule associated complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA]; GO:0007017 - microtubule-based process [Evidence IEA] codon_start : 1 note : N-3 kinesin product : kinesin family member 14 protein_id : NP_001074727.1

name	Zfp281 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244048 CCDS:CCDS15327.1 GeneID:226442 MGI:3029290
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger protein 281 protein_id : NP_808311.1

name	EG623818 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149234280 GeneID:623818 MGI:3645105
definition	codon_start : 1 product : similar to Hydroxymethylbilane synthase protein_id : XP_893411.2

name	Nr5a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14010847 CCDS:CCDS15328.1 GeneID:26424 MGI:1346834
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008206 - bile acid metabolism [Evidence IMP]; GO:0042632 - cholesterol homeostasis [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : fetoprotein transcription factor product : nuclear receptor subfamily 5, group A, member 2 protein_id : NP_109601.1

name	LOC100043143 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234321 GeneID:100043143
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480063.1

name	Ptprc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114326512 CCDS:CCDS15330.1 GeneID:19264 MGI:97810
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0005925 - focal adhesion [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0019901 - protein kinase binding [Evidence ISS] [Evidence IPI]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005001 - transmembrane receptor protein tyrosine phosphatase activity [Evidence ISS] GO_process : GO:0030183 - B cell differentiation [Evidence IMP]; GO:0042100 - B cell proliferation [Evidence IMP]; GO:0050853 - B cell receptor signaling pathway [Evidence IMP]; GO:0007166 - cell surface receptor linked signal transduction [Evidence ISS]; GO:0051607 - defense response to virus [Evidence IMP]; GO:0001960 - negative regulation of cytokine and chemokine mediated signaling pathway [Evidence IDA]; GO:0006469 - negative regulation of protein kinase activity [Evidence IDA] [Evidence ISS]; GO:0001915 - negative regulation of T cell mediated cytotoxicity [Evidence IMP]; GO:0050857 - positive regulation of antigen receptor-mediated signaling pathway [Evidence IMP]; GO:0045860 - positive regulation of protein kinase activity [Evidence ISS]; GO:0042102 - positive regulation of T cell proliferation [Evidence IMP]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] [Evidence IDA]; GO:0051726 - regulation of cell cycle [Evidence IDA]; GO:0051209 - release of sequestered calcium ion into cytosol [Evidence IDA]; GO:0030217 - T cell differentiation [Evidence IMP]; GO:0042098 - T cell proliferation [Evidence IMP]; GO:0050852 - T cell receptor signaling pathway [Evidence ISS] codon_start : 1 note : lymphocyte common antigen product : protein tyrosine phosphatase, receptor type, C protein_id : NP_035340.2

name	Ascl5 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:226439
definition	number : 1 pseudo : _no_value

name	Ascl5 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:226439
definition	number : 2 pseudo : _no_value

name	LOC100042513 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042513
definition	number : 1 pseudo : _no_value

name	LOC100042513 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042513
definition	number : 2 pseudo : _no_value

name	LOC100042567 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042567
definition	number : 4 pseudo : _no_value

name	LOC100042567 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042567
definition	number : 3 pseudo : _no_value

name	LOC100042567 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042567
definition	number : 2 pseudo : _no_value

name	LOC100042567 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042567
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:234223
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:178474
definition	standard_name : AW545782

name	(CDS detail)
type	STS
link
xref	UniSTS:178473
definition	standard_name : AW493108

name	(CDS detail)
type	STS
link
xref	UniSTS:165106
definition	standard_name : AI834762

name	(CDS detail)
type	STS
link
xref	UniSTS:178472
definition	standard_name : AW061096

name	(CDS detail)
type	STS
link
xref	UniSTS:128535
definition	standard_name : D1Mit197

name	(CDS detail)
type	STS
link
xref	UniSTS:167269
definition	standard_name : RH127070

name	(CDS detail)
type	STS
link
xref	UniSTS:234225
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234227
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234224
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128905
definition	standard_name : D1Mit538

name	(CDS detail)
type	STS
link
xref	UniSTS:207222
definition	standard_name : RH126594

name	(CDS detail)
type	STS
link
xref	UniSTS:234226
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:167266
definition	standard_name : RH126840

name	(CDS detail)
type	STS
link
xref	UniSTS:186334
definition	standard_name : 25.MHAa58c1.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:167297
definition	standard_name : D1Ertd811e

name	(CDS detail)
type	STS
link
xref	UniSTS:210273
definition	standard_name : RH136280

name	(CDS detail)
type	STS
link
xref	UniSTS:271761
definition	standard_name : PMC193920P1

name	(CDS detail)
type	STS
link
xref	UniSTS:161171
definition	standard_name : RH124349

name	(CDS detail)
type	STS
link
xref	UniSTS:128904
definition	standard_name : D1Mit537

name	(CDS detail)
type	STS
link
xref	UniSTS:207223
definition	standard_name : BB210524

name	(CDS detail)
type	STS
link
xref	UniSTS:207221
definition	standard_name : BB209933

name	(CDS detail)
type	STS
link
xref	UniSTS:142251
definition	standard_name : D1Mit514

name	(CDS detail)
type	STS
link
xref	UniSTS:114168
definition	standard_name : AU026553

name	(CDS detail)
type	misc_feature
link
xref
definition	note : proximal sequence element

name	2310006M14Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149234276 GeneID:76422 MGI:1923672
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : RIKEN cDNA 2310006M14 gene transcript_id : XR_033650.1

name	LOC667686 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149234319 GeneID:667686
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 5 Proteins product : similar to macrophage migration inhibitory factor pseudo : _no_value transcript_id : XR_034494.1

name	(CDS detail)
type	misc_signal
link
xref
definition	note : 3' signal

clone name	MSMg01-525P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334I21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-155B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176M18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-447I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326L03
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-172B20.T7 (MSMg01no172_b20.b1)	MSMg01-172B20.TJ (MSMg01no172_b20.g1)
ACC	AG368131	AG368132
length	731	731
length of high quality (start - end)	316 (39 - 354)	289 (69 - 357)
definition	CHROMAT_FILE: MSMg01no172_b20.b1 PHD_FILE: MSMg01no172_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:30 2005	CHROMAT_FILE: MSMg01no172_b20.g1 PHD_FILE: MSMg01no172_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:30 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(139,096,764 - 139,097,074)	(138,930,898 - 138,931,186)
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT TATTGGTTCATCCTAGGAACCCAAACCACGTCTTATTCAGAAAACAAAAT ATCAGAGATTACCTGCCCAGTTAAATGTACTATATGGATTCTATAAATGA TACTCTTAAGACAAAAACTTAAACAGGGGACAAAAATGGTCCTTTTTAAA CTTGTAATTCAGATGAAGCCAACATTTCCTTAACAATAACCCTAGCAGCT GTGCTGAGCGTCTCTTCACTTAGAGGATTCTCTTTGGGGGCTGGAGAGAT GGCTCAGCATCTAAGAGCACTTGCTGCTCTTTCAGAAGACCATGGTTTTT GATTCTTTTTATGCCCCACCTCCCTCACAACTTCATGTGACTCCAGCTTC ATGGAATCTAATAAACCCTCCTAGTCTCGGCAGGCACCTGCACCCATGTG CACATACATGCACACAGACATATACATACATACATACATACATACATACA TACATACATACATACATACATACATACATAACAATAAAATGAAATATAAA TATACTTCATTTCATCCCAGTAACACTGTGACTCAGTCTTTTTATTATTC AGAAGGGGAAACCGAAGTATGATGAAGTCCAGGAAGACATCAAAACTCAC ATGTATAGCAAATTAGCGAGTTGAGGTCCCTTCATTGTCCCTCTAAGGCC TTCTAACTGGGAGCCCAGATGTTCTTCACAG	ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXAGGTGTGAGGACAACCTCAGGTGTCAGTCCCC TCCTGCCATTTGTGACAGAGGGTCTCATTGTATACTGCTGTGTTGCCCAG CCTATCTGGCCTGCAGGCTTCCTGTGATTCTCCTGCCTCAGCCTCCCATC TTCCTGTAGGGGACGTGAGAGGCAAAACAAGCCCGTGTTCTTTGTGAACA GGTGGGTGGCTCCTTTAATCTGATACCTGAGACAGGAGGATCAGAGTCTG AGGATAGCAGAGTGTACAGAGCAAGACCCTGCCTAAAAACACCATAGTAT TCATGTATCTTAAAAGCCCCCTCCGCACTCAGAAATGTGGGCACAGCAAT TTTGTCACGTGAGCCAGGAAAAACTAGCATTCAAGAATGTAAAGCTCAAG GCCGTGTTCATATGAAGCACAGGCTCACTTCAATGAGAATAAGGGACAGT TTGTTCTGAGCCAAATGTCAGTGACCTTGGCCAGGGAACCTGGATTCAGG CCACCCTGAGTAACACGTTTCACCACGGATGAGGCTCGTGAACTGTCTGT CTGTCTGTCATTACTGAGCATGATTAAGTAATAATTCAAGACTTTTACCA TATATATCATTTTATCCCATTACAGCCCAGTAGACTATCCTTCTCAACGC TTCAATGTTATCCGCATCAAGGATTATCTAT
quality values	Open. Hide. 23 28 29 29 29 28 22 22 22 22 22 25 26 30 33 33 33 48 35 30 30 35 35 36 47 47 39 46 43 43 46 57 57 36 29 17 23 23 42 41 68 68 42 42 47 47 68 51 68 68 68 68 57 48 43 43 31 37 42 42 50 50 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 68 68 68 68 68 68 51 47 47 47 47 57 53 53 50 50 50 50 57 53 42 38 36 36 36 36 33 44 39 39 41 39 31 24 22 14 14 11 11 11 18 27 34 42 50 50 50 50 53 59 59 59 57 57 57 43 43 43 53 53 53 57 57 59 57 53 53 47 47 47 47 47 47 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 54 54 54 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 27 27 9 9 9 27 27 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 34 34 26 37 39 48 57 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 44 46 36 28 15 14 14 21 21 36 40 59 59 54 54 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 53 53 59 59 59 41 33 47 30 17 15 10 10 10 14 9 10 9 8 10 10 11 11 11 11 11 11 12 11 11 11 18 22 26 35 34 50 50 50 50 53 50 57 57 57 48 48 57 59 59 59 59 57 57 57 57 57 57 59 48 43 43 43 32 35 18 17 17 18 22 23 34 25 18 15 21 19 23 18 18 13 15 15 23 25 34 36 42 43 43 47 59 57 54 57 57 57 57 54 54 54 57 57 57 54 48 48 59 48 48 48 48 50 57 43 44 50 59 59 59 59 59 57 68 57 57 57 68 68 68 59 59 68 68 57 57 37 37 37 57 52 59 57 68 68 68 57 57 57 57 57 57 57 57 57 57 44 47 35 43 35 42 50 59 59 68 57 57 57 57 57 57 48 48 48 57 57 59 59 59 59 59 48 57 48 48 48 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 54 54 54 54 54 54 57 57 59 59 59 59 57 54 54 54 57 57 42 42 47 57 57 42 42 42 42 40 43 40 48 48 59 59 59 57 57 57 50 50 48 48 32 21 12 10 10 13 23 32 31 31 35 36 39 39 37 37 39 34 24 23 12 11 12 12 26 28 32 30 19 25 30 30 30 25 28 31 32 28 30 24 28 28 30 30 28 24 24 24 24 14 14 14 30 26 24 22 22 32 27 29 20 20 20 26 26 24 19 10 10 15 20 26 32 27 20 23 23 20 16 15 10 10 10 21 22 30 30 25 28 30 30 29 30 32 37 37 19 14 10 10 10 10 12 15 19 25 25 24 24 24 23 17 14 15 12 16 13 15 13 12 11 11 18 18 19 18 16 14 19 10 10 10 10 10	Open. Hide. 10 10 9 9 15 15 10 10 10 21 21 47 37 39 50 50 53 53 57 57 57 53 53 53 53 53 53 53 50 57 57 28 26 10 13 10 21 21 36 36 23 26 12 11 11 26 23 44 44 37 59 59 68 48 50 47 50 50 50 57 57 57 41 41 48 48 48 48 50 50 50 68 68 68 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 51 50 50 50 50 57 57 57 43 43 24 20 20 18 24 38 44 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 57 57 43 43 22 22 23 44 44 59 57 57 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 57 54 52 59 59 59 59 68 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 59 59 59 59 57 57 57 57 57 57 48 59 43 43 39 47 28 30 30 20 17 14 15 15 24 32 43 57 57 57 57 68 57 59 59 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 36 36 19 16 8 8 8 8 8 10 11 11 11 12 12 12 10 8 10 8 8 8 10 12 12 12 12 20 15 22 21 35 39 39 48 43 39 43 40 40 40 59 59 59 48 48 48 59 59 59 59 59 59 59 59 59 48 43 30 24 15 13 13 18 19 25 32 37 44 44 44 39 24 24 12 13 13 23 34 41 44 43 43 59 59 59 59 42 42 35 35 26 32 26 32 36 36 41 43 44 44 57 48 48 48 57 57 54 54 54 59 59 59 59 50 50 35 43 50 59 59 59 54 54 57 57 57 57 57 57 54 52 43 44 31 29 32 43 44 57 57 47 43 43 43 43 43 35 43 37 50 43 48 48 48 44 44 48 48 48 44 44 47 47 47 43 43 43 43 43 44 43 44 44 48 44 44 20 20 20 18 28 18 22 24 24 24 29 37 37 36 37 39 44 39 39 35 35 35 36 43 43 48 57 54 42 42 33 33 28 32 32 37 36 39 39 43 43 43 37 37 43 37 33 33 24 28 34 41 36 28 19 15 15 15 23 26 37 39 46 30 30 14 19 19 23 19 13 15 11 12 12 28 30 31 26 17 17 17 24 16 8 8 8 8 8 14 11 12 9 14 10 8 8 8 8 8 8 8 10 10 14 17 22 19 12 13 21 16 10 9 9 10 15 17 30 22 17 11 11 11 17 22 13 14 11 13 11 13 10 10 15 10 10 10 12 12 14 10 18 13 11 11 10 11 11 11 11 11 11 9 9 9 9 11 11 10 13 15 16 13 10 10 10 12 13 15 10 10 12 9 9 9 13 13 12 14 10 13 10 13 10 10 13 8 6 6 6 8 8 11 12 15 10 9 8 8 7 7 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no172_b20.b1 MSMg01no172_b20.b1 CHROMAT_FILE:
MSMg01no172_b20.b1 PHD_FILE: MSMg01no172_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:30 2005
         (316 letters)



>mm_chr1_139096627_139097342
          Length = 716

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttattggttcatcctaggaacccaaaccacgtcttattcagaaaacaaaatat 64
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaatttcttattggttcatcctaggaacccaaaccacgtcttattcagaaaacaaaatat 389

                                                                       
Query: 65  cagagattacctgcccagttaaatgtactatatggattctataaatgatactcttaagac 124
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cagagattacctgggcagttaaatgtactatatggattctataaatgatactcttaagac 329

                                                                       
Query: 125 aaaaacttaaacaggggacaaaaatggtcctttttaaacttgtaattcagatgaagccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaaaacttaaacaggggacaaaaatggtcctttttaaacttgtaattcagatgaagccaa 269

                                                                       
Query: 185 catttccttaacaataaccctagcagctgtgctgagcgtctcttcacttagaggattctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 catttccttaacaataaccctagcagctgtgctgagcgtctcttcacttagaggattctc 209

                                                                       
Query: 245 tttgggggctggagagatggctcagcatctaagagcacttgctgctctttcagaagacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tttgggggctggagagatggctcagcatctaagagcacttgctgctctttcagaagacca 149

                      
Query: 305 tggtttttgat 315
           |||||||||||
Sbjct: 148 tggtttttgat 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no172_b20.g1 MSMg01no172_b20.g1 CHROMAT_FILE:
MSMg01no172_b20.g1 PHD_FILE: MSMg01no172_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:30 2005
         (289 letters)



>mm_chr1_138930698_138931386
          Length = 689

 Score =  505 bits (261), Expect = e-147
 Identities = 282/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgtgaggacaacctcaggtgtcagtcccctcctgccatttgtgacagagggtctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgtgaggacaacctcaggtgtcagtcccctcctgccatttgtgacagagggtctcat 260

                                                                       
Query: 61  tgtatactgctgtgttgcccagcctatctggcctgcaggcttcctgtgattctcctgcct 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tgtatactgctgtgttgcccagcctatctggcctgcaggcttcttgtgattctcctgcct 320

                                                                       
Query: 121 cagcctcccatcttcctgtaggggacgtgagaggcaaaacaagcccgtgttctttgtgaa 180
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 321 cagcctcccatcttcctgtaggggacgtgtgaggcaaaacaagcccgcgttctttgtgag 380

                                                                       
Query: 181 caggtgggtggctcctttaatctgatacctgagacaggaggatcagagtctgaggatagc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggtgggtggctcctttagtctgatacctgagacaggaggatcagagtctgaggatagc 440

                                                            
Query: 241 agagtgtacagagcaagaccctgcctaaaaacaccatagtattcatgta 289
           |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 agagtgtacacagcgagaccctgcctaaaaacaccatagtattcatgta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information