BAC Information

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BAC

Clone NameMSMg01-172D08
Chromosome1 (Build37)
Map Location 80,236,128 - 80,236,409
singlet/doubletsinglet
Overlap genenone
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik
Downstream geneCul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172D08.T7 (MSMg01no172_d08.b1)MSMg01-172D08.TJ (MSMg01no172_d08.g1)
ACCAG368197AG368198
length718711
length of high quality
(start - end)
290 (70 - 359)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no172_d08.b1 PHD_FILE: MSMg01no172_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:37 2005CHROMAT_FILE: MSMg01no172_d08.g1 PHD_FILE: MSMg01no172_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATT
CCAGAAGATTTCCCCAGGGAGATCTCTGAGTTCAAGGTCATCTGGGATTA
AAAGCGTGGTGGCACGAACCTTTAATTGAGACCACATTCTGTTGGAGAGC
TATATAAGGACATTGGAAGAAGGAAGATTCATTCTCTCTCTTGGCCTGCT
TGCCTGGTGGGACTGAGTGACTGCTAGATCCTTGGACTTCTGTTCACAGC
TGCTGCTGACCAGTGTTGGGAGTTGGACTACAGACTGTAAGTCATCAACA
AATTTCCTTACTATATAGAGAATACCCATAAGTTTTGTGACTCTAGAGAA
CCCTGGCTAATACATGGAACCCCCTGAAAAGCATACTAGGGCTGGGTAAA
CATTTGCTCCATGCACCTCACTATTCAACACTACTGAAGCAGCGCAGGCT
AGCCTCGGCTTCCCACTTGTTTCACATGTTCTTTAAAAGAACTTTCAATT
TGCCATGCAGAAAGCATCAAGTGCTTACTGTGACATGTGTTATTTGTGTA
TGAAGCTTGCTTATGAATAAATGAGTATGCTAGACCATGTGTGAAGAGAT
TAACTACTAATGCATAGCCTCTTATCATGCGATAAGTCTCCCCAATTCTG
GTGAACGACGTATGTGCTCCCCGCTTTGTTTTGTAAATCTATACCCCCTC
CTATTTTATTCTGCCCCT
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGGGTGAGCCATTCTGCAGTT
GACTGCAGCTCTGTCCTCTCTACGGAAGAAAATCAGACACACTTAGGAAC
TCCCTTCGCATTGCGCTTTCTCCCCCCACTCTTTTCCTTCCTCTTCAGCA
CCAAACCTGCAAGGCCATTGCCGCGTGCGCTGGAACGCACAATGCAGTGT
CTCACAGGTAGGCGGACTGCCACTGCCCTAGCGGGGAGTCCTGTTGGGTT
AGACAGAACTCCATTCTCTCTTTATCACCCTTCCCTACGGAGTCTGGCCA
GCAGATCGTATCTAGCCAGGACAAGGCACAGCTGCGAATGGAATGATGGA
TGCTGAGTCCAAAAAAAAAAAAATTATCTAAGAAAAAGTTCTTAGAGGTT
TTCAGTTCTTTCCATCTCTCTTTCGGATCTGACCCAAGGAATGCTGGAGG
GGCTGAGGCGCTCCGGCAGAGCTCTGTGGATCTCATTCACGAGAGAGGAT
CTCCAGTAAACTGTGCACGGAACTGAAGACAACTGCCTTTATTAGCTCCT
TGTTTCATGAGGATACGCTTCATCAAATAAAAGTCCCAGCCGGGCTTAGC
TGGGGTGATGACTTTCCTTAGTCTGGCATCACGTGGAGGACCACCCAGCG
TGCTCTCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_d08.g1 MSMg01no172_d08.g1 CHROMAT_FILE:
MSMg01no172_d08.g1 PHD_FILE: MSMg01no172_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:37 2005
         (283 letters)



>mm_chr1_80235928_80236610
          Length = 683

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccgggtgagccattctgcagttgactgcagctctgtcctctctacggaagaaaatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccgggtgagccattctgcagttgactgcagctctgtcctctctacggaagaaaatcag 260

                                                                       
Query: 61  acacacttaggaactcccttcgcattgcgctttctccccccactcttttccttcctcttc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacacttaggaactccctttgcattgcgctttctccccccactcttttccttcctcttc 320

                                                                       
Query: 121 agcaccaaacctgcaaggccattgccgcgtgcgctggaacgcacaatgcagtgtctcaca 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 agcaccaaacctgcaaggccattgccgcgtgccctggaacgcacaatgcagtgtctcaca 380

                                                                       
Query: 181 ggtaggcggactgccactgccctagcggggagtcctgttgggttagacagaactccattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtaggcggactgccactgccctagcggggagtcctgttgggttagacagaactccattc 440

                                                     
Query: 241 tctctttatcacccttccctacggagtctggccagcagatcg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctttatcacccttccctacggagtctggccagcagatcg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)