BAC Information

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BAC

Clone NameMSMg01-172I08
Chromosome1 (Build37)
Map Location 61,130,370 - 61,130,653
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos
Downstream geneLOC433313, LOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172I08.T7 (MSMg01no172_i08.b1)MSMg01-172I08.TJ (MSMg01no172_i08.g1)
ACCAG368405AG368406
length711713
length of high quality
(start - end)
317 (47 - 363)286 (79 - 364)
definitionCHROMAT_FILE: MSMg01no172_i08.b1 PHD_FILE: MSMg01no172_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:00 2005CHROMAT_FILE: MSMg01no172_i08.g1 PHD_FILE: MSMg01no172_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAGTGATGGGGTGATG
GGCAAGCAACGAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC
ACGCTGCGGGCTATATAAGCAGCACTATTTTCCCGGTTCGGGGTCTTCCT
GAGAAGTAAGCAATAAAAGCTTTTGCCGCGGAAGATTCCGGTGGTTGCGT
CTTTCTTGCCGGCCGAGTGGGACGGAACTCAATACAGCACCCACATGGTG
GCTCACAACCATCTATAACTCCAGTCCCAGGAGATCTGATACCTTCTTCT
GCTTTCCCTGTGCATCNATCTCATGACATGCCGCACTCAATACAGGCAAA
ACAGTTATACCTATAAAATAATCAGAAATAAAGCCTTAGATAGATATGTA
TATTATATATTAATAATATAACAATAATATTATATAGTTTTAGGGGCTAT
GAAATATATAATATGTGAAATATAGCATTGATCTTATATGTAATTAATAT
AAGATAACATATAACTTTTATATGTGACATAATATATATCATTACCTATA
TTTGTGGTTTTGAATGCGAAATGTTTCTTACATGTTCCCGTAGCATCACT
ATAGAATTTTTGCGCGATCCTTACCAGTTTAAGCCCTTGTTGCAACACGT
GCATTCTTGTT
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGTTACCCAGAACAATTCTG
GTGTAGCAAAAACCCTATTAAGGACATGACCTTCCTACTGCTACAGTGAA
GACTCCATTAAAGTCTTGACTTTCCTACCTGAGAGGCAGATTTATCTTGG
CTTACAGATAGTTACCCTGAGTTAGGAAATGAAGGTGAGGAACTGAAGTC
AGGATTGATAAATATACCTGGGAATAAACTTTGAGTAGATGTGAAAATGA
CTGGCAGCCAGGAAAGCAGAAGTCTGATGAGTGTTTGAGGGAGTTGTATC
AAATGCACCATATATTATGCATCCAGNCCGGCCCCGCTTTGGTTAATATT
AGTTGAAAATGCTCTTTTAAACCCACATAAATCAATAAAAAGGTAGGCAC
ACCATCACTTACTTCTGATGTGTCTATGGAACATAATGAGCAAGGAAAAA
AAAAACAAACCCACATAGTGGATTCTGGAGCCATGAATAACAATGAACGA
CGATGTGATCCTGGATAAGAGAGTCAAGGTCCAGCCTAGGAATTACCCAG
TGCCAGGGGAGTAAAATCCTCGCCTGCATGCTAGGATTCTACACCTGCAT
CCTGCCAACAACTGTTCACAGTTTTCTCTTTACCCCTTTACGTTCCCTGC
TTTCCCCTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_i08.g1 MSMg01no172_i08.g1 CHROMAT_FILE:
MSMg01no172_i08.g1 PHD_FILE: MSMg01no172_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:00 2005
         (286 letters)



>mm_chr1_61130170_61130855
          Length = 686

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagttacccagaacaattctggtgtagcaaaaaccctattaaggacatgaccttcctac 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ccagttacccagaacaattctggtgtagcaaaaaccctgttaaggacatgaccttcctac 260

                                                                       
Query: 61  tgctacagtgaagactccattaaagtcttgactttcctacctgagaggcagatttatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctacagtgaagactccattaaagtcttgactttcctacctgagaggcagatttatctt 320

                                                                       
Query: 121 ggcttacagatagttaccctgagttaggaaatgaaggtgaggaactgaagtcaggattga 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ggcttacagatagttaccctgagttaggaaatgaaggtgaggaaatgaagtcaggattga 380

                                                                       
Query: 181 taaatatacctgggaataaactttgagtagatgtgaaaatgactggcagccaggaaagca 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatatacctgggaataaactttgagtagatgtgaaaatgactggcagccaggaaagca 440

                                                       
Query: 241 gaagtctgatgagtgtttgagggagttgtatcaaatgcaccata 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagtctgatgagtgtttgagggagttgtatcaaatgcaccata 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)