Query= MSMg01no172_j12.b1 MSMg01no172_j12.b1 CHROMAT_FILE:
MSMg01no172_j12.b1 PHD_FILE: MSMg01no172_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:06 2005
(366 letters)
>mm_chr1_51589972_51590735
Length = 764
Score = 638 bits (330), Expect = 0.0
Identities = 354/362 (97%), Gaps = 2/362 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtattatttccaacaaaatgcaaaaaaaaatcataaaattcacattgataact 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtattatttt-aacaaaatgcaaaaaaaaatcataaaattcacattgataact 263
Query: 65 caattaaaaattgcaacctctagaataggaaaatacttccacattagtcatctcctgctg 124
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caattaaaaattgcaagatctagaataggaaaatacttccacattagtcatctcctgctg 323
Query: 125 tgtaacaaactactccaaaaggaacatttcttcctgtgtggttcctgtcactcaggaatt 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 tgtaacaaactactccaaaaggaacatttcttcctgtgtggttcctgccactcaggaatt 383
Query: 185 cttcttacagaacatagtggggaatgcttcttagggatcttcattctttaacaactaagt 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 cttcttacagaacatagtggggaatgcttctttgggatcttcattctttaacaactaagt 443
Query: 245 tggaaaaatgaagaagaattattcaaggtctcattattatatttgtttggcaattggtgc 304
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 444 tggaaaaatgaagaagaattattcaaggtctcattaatatatttgtttg-caattggtgc 502
Query: 305 tggctatcagccactttttgtgagcaaagctcaccttgtctgtttgcttattccttgtat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tggctatcagccactttttgtgagcaaagctcaccttgtctgtttgcttattccttgtat 562
Query: 365 gt 366
||
Sbjct: 563 gt 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 764
Length adjustment: 9
Effective length of query: 357
Effective length of database: 755
Effective search space: 269535
Effective search space used: 269535
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_j12.g1 MSMg01no172_j12.g1 CHROMAT_FILE:
MSMg01no172_j12.g1 PHD_FILE: MSMg01no172_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:06 2005
(285 letters)
>mm_chr1_51714613_51715297
Length = 685
Score = 489 bits (253), Expect = e-143
Identities = 277/285 (97%)
Strand = Plus / Minus
Query: 1 cacatgtggctccgtgtggggaaggggaagcatgtgttgtgacatttgcatcaggtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cacatgtggctccgtgtggggaaggggaagcatgtgttgtgacatttgcatcaggtcaaa 426
Query: 61 ggatgctctgcaagcaagtgttatggagttcacccaagatgcaaaactgtatttgaataa 120
||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 425 ggatgatctgcaagcaagtgttatagcgttcacccaagatgcaaaactgtatttgaataa 366
Query: 121 gtcaggtagcagctgacattgaagcacagtacggtggaaaagaagccaacgatacggagc 180
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 365 gtcaggtagcagctgacattgaagcacagtatggcggaaaagaagccaacgatacagagc 306
Query: 181 ctagcttgtgagctttcacatatatctatcattagcgttttcatggtttgaaatatatac 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctagcttgtgagttttcacatatatctatcattagcgttttcatggtttgaaatatatac 246
Query: 241 cctatttaaaaagctaatgtattttcaaaaattgttattatatga 285
||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 245 cctatttaaaaagctaatgtatttttaaaaattgttattatatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
