BAC Information

Click to search

BAC

Clone NameMSMg01-172L06
Chromosome1 (Build37)
Map Location 169,665,645 - 169,665,926
singlet/doubletsinglet
Overlap geneLmx1a
Upstream geneLOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg
Downstream geneLOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172L06.T7 (MSMg01no172_l06.b1)MSMg01-172L06.TJ (MSMg01no172_l06.g1)
ACCAG368534AG368535
length719707
length of high quality
(start - end)
294 (70 - 363)282 (81 - 362)
definitionCHROMAT_FILE: MSMg01no172_l06.b1 PHD_FILE: MSMg01no172_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:13 2005CHROMAT_FILE: MSMg01no172_l06.g1 PHD_FILE: MSMg01no172_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATT
CCATCCGATATTCATCAGTGGCTTACTCTACCACTTGGTGTTTGGGGAAC
TAAGATGCATTTCCTTCTCATCTGAATTCAGAAATGTTTCAGGTTAAAAA
AACATAAACTCAGCAATCCTCGCTACCCTGGAGGCTCAGACAGGAGGATC
ACAAGTTCAAGGCCTGCGTGGGCTATAGAGTGAGTTCAAGAGCAACTTAA
GTGATACCCTACTTACAATTTAAAAAATAAATAAATAAACCAAAGAGAGC
AGAGACCTAGCATGCTTTTGGCTCTAAGGTCAATCCCCGTCACTGAAAGT
AAGTATAATTAATTAGTTGCCTTACCTTTTGAGGACCAATTCCTGCGGGT
CTTCAGGGATGACGGACCAGCTATTTGGCCCCAGAGACGTGGATAAAAGG
TCCCCCTTCCTTTCTCACCCCTGCTTCTTTTTACTTCCATTCCCAGTCCT
GAGATGGAATTATTTTAAATTTAGAGCATTCTTTCTAAATTTTCAGCTCT
TTGGAAAAAGCAGCCAACATGCATTCCTTGCCTTAGCTATCCCTGGCCTT
ATCTATCCCTGGCCTTAGCTATCCCTGGTCTTAGTTGTCCCTGGTCTTAG
CTGTCCCCTGGCTTATCTGTCCCTGTGCTTATTTGTCCCTGGTCTCAGCT
TGTTTTTGTCCTTACCTTN
NCATCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATGATTTTGTTCATAGT
AACCCTGACTGCTTCCACTTGTGGCTCATAAGCCTGATGCAAGAGGCACA
CTTGGCTACATGGCTTGTCTGCTGGGGGTTCAGCTCCCACCAGGGCATCT
TGCTTTCCTTCCAGCATCTGGCTTTCCAAGGATTGACTCAAGATTCTTTG
GAGCCCAGTAGCGTTTATATGTGAGCCAAAGACCAACTTCCCTTACTGTA
AGTACTGTGAATATGACAATATCTATTTATCAGTATCAGACTCGGACTAA
TAGTTTCTTACATATTTTGTCTTCCCCCCTCACTCTTTTCCTTTCTTCTA
TTTTTTTTATACCCTACCTCGATGAGCAAACCCTGAAATCTCTTCTCTGG
ATGTTTGACCTGCGCAAGTGCCTCTGCCAGCCAGCCTTTGTGGAACCACG
GAGAGAGGAGAAGGTATATTTGTAAGCAGGGTCAGTGGTCTTCACACACA
CGTTGCTCTTCAGAGACTGTCTTCATTGACACCCAAACTCTAAGAGCCAG
TTCAAACACAGAATTTTGAGTGAGGTTTGTGTTAATTCACAGTACATGTC
TGTCCTTCTATCTGGNAGCTAGGCTTCTATGAGTGGGATTTTCCTGGAGC
TGTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_l06.g1 MSMg01no172_l06.g1 CHROMAT_FILE:
MSMg01no172_l06.g1 PHD_FILE: MSMg01no172_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:13 2005
         (282 letters)



>mm_chr1_169665445_169666126
          Length = 682

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatgattttgttcatagtaaccctgactgcttccacttgtggctcataagcctgatgc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 agaatgattttgttcatagtaaccctgactgcttccacttgtggctgataagcctgatgc 260

                                                                       
Query: 61  aagaggcacacttggctacatggcttgtctgctgggggttcagctcccaccagggcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aagaggcacacttggctacatggcttgtctgctgggggttcagctcccaccagggtatct 320

                                                                       
Query: 121 tgctttccttccagcatctggctttccaaggattgactcaagattctttggagcccagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctttccttccagcatctggctttccaaggattgactcaagattctttggagcccagta 380

                                                                       
Query: 181 gcgtttatatgtgagccaaagaccaacttcccttactgtaagtactgtgaatatgacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgtttatatgtgagccaaagaccaacttcccttactgtaagtactgtgaatatgacaat 440

                                                     
Query: 241 atctatttatcagtatcagactcggactaatagtttcttaca 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctatttatcagtatcagactcggactaatagtttcttaca 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)