Query= MSMg01no172_p13.b1 MSMg01no172_p13.b1 CHROMAT_FILE:
MSMg01no172_p13.b1 PHD_FILE: MSMg01no172_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:33 2005
(313 letters)
>mm_chr1_149304303_149305016
Length = 714
Score = 576 bits (298), Expect = e-169
Identities = 307/310 (99%), Gaps = 1/310 (0%)
Strand = Plus / Plus
Query: 5 gaattcattctcttttttgaaacttattttaaatttacttccatctgaggatggaggctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctcttttttgaaacttattttaaatttacttccatctgaggatggaggctc 264
Query: 65 tattttatactgactcttcatccagtacttagaaaaaa-acaatattttatgggttacaa 123
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 265 tattttatactgactcttcatccagtacttagaaaaaatataatattttatgggttacaa 324
Query: 124 acatggtgtactgcaaagtaataaatagtgtaaaacatgctattagtggaatatacttct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatggtgtactgcaaagtaataaatagtgtaaaacatgctattagtggaatatacttct 384
Query: 184 aaatagtacatcaccaacataggcagtgataatattcctcatgcaaatttaaccaatcag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatagtacatcaccaacataggcagtgataatattcctcatgcaaatttaaccaatcag 444
Query: 244 ataaaattaatcttgccctgtaataattgttcatttaaattgatagataaatgattatgc 303
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 ataaaattaatcttgccctgtaataattggtcatttaaattgatagataaatgattatgc 504
Query: 304 tactatttta 313
||||||||||
Sbjct: 505 tactatttta 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space: 214320
Effective search space used: 214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_p13.g1 MSMg01no172_p13.g1 CHROMAT_FILE:
MSMg01no172_p13.g1 PHD_FILE: MSMg01no172_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:33 2005
(530 letters)
>mm_chr1_149383062_149383992
Length = 931
Score = 911 bits (471), Expect = 0.0
Identities = 516/531 (97%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 1 accttaagtgtttgaatgaaggagaaacctcatagctgtttgctttccaa-tttttctat 59
|||||||||||||||| ||| |||| |||||||| |||||||||| || |||||||||
Sbjct: 731 accttaagtgtttgaacgaaatagaatcctcatagttgtttgcttttaaattttttctat 672
Query: 60 gctctcctttataatctacaggcagatatatataatgaagcaattttgtaggtttgaaga 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 671 gccctcctttataatctacaggcagatatatataatgaagcaattttgtaggtttaaaga 612
Query: 120 atatgaaatgacagttggcactgtgcattttttcatgttgtgttttatccttacagtttt 179
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atatgaaatgacagttggcgctgtgcattttttcatgttgtgttttatccttacagtttt 552
Query: 180 agcacatataaaaatagtatgttaaacaatagatcacagataagtaaattaaaatgcaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agcacatataaaaatagtatgttaaacaatagatcacagataagtaaattaaaatgcaga 492
Query: 240 gggaattcaagtttagatagacaatatttatttttaccacacataaaaaaggaaatgagg 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 491 gggaattcaagtttagatagacaatatttatttttaccacacataaaaaaggaaatgatg 432
Query: 300 tcatagaggaagatgctgggagtataggtgcattaaagagcgcttgcctaatatggacaa 359
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 431 tcatagaggaagatgctgggagtgtaggtgcattaaagagtgcttgcctaatatggacaa 372
Query: 360 gacactgagactgacacacagcacaactaattcaaaaccaacacggctggctgcaataag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gacactgagactgacacacagcacaactaattcaaaaccaacacggctggctgcaataag 312
Query: 420 attactgtagtagctgagaagattttatttgtaattgtaaaataaatttatttctaagta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 attactgtagtagctgagaagattttatttgtaattgtaaaataaatttatttctaagta 252
Query: 480 taagtctgtgaaaggactgattcacaaatggcaaggattatttttattttc 530
||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 251 taagtctgtgaaaggactgatgcacaaatggcaaggattatttttattttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space: 478920
Effective search space used: 478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
