BAC Information

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BAC

Clone NameMSMg01-173B04
Chromosome1 (Build37)
Map Location 147,029,209 - 147,029,528
singlet/doubletsinglet
Overlap genenone
Upstream geneRbm6-ps2, Rgs1, EG639456, Rgs21, Rgs18, LOC667877, LOC625057
Downstream geneLOC383570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173B04.T7 (MSMg01no173_b04.b1)MSMg01-173B04.TJ (MSMg01no173_b04.g1)
ACCAG368791AG368792
length696766
length of high quality
(start - end)
325 (45 - 369)35 (75 - 109)
definitionCHROMAT_FILE: MSMg01no173_b04.b1 PHD_FILE: MSMg01no173_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:40 2005CHROMAT_FILE: MSMg01no173_b04.g1 PHD_FILE: MSMg01no173_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGTCATATCTTAACAGAATAGCACCATCCTAATAATAAGAGTCAA
TAATGACATACAAAAGTAAATCTAAAGACCATTATCTTCATAAAACCACA
ATGCACAGTATATTTTACAATCAAATCCAACAAGCACGAAATAGATGTAA
TCTATAAAATGTGATTATCAATTTACTCAGTGCTGGTTCAGTTATTGTTT
GAGTGCTCTTGTAATGTATTTTTGAATGTTTGCCACTTTTAGTACTCTAG
ATCACTTTGTATAGCTCTGAGAATGACCTGATTTGATTAAGTTCTTTGTT
TTTCCTAACATGATGAATCGCCCACCCCTTCCTACAATGCACAGGAACCT
GGAGTTTGGGATCATTACACTTTTACTATTAGTATCATTTAAAAAATCTG
TATGTTTTTCTGGAAGATAAATTGCTTCATTTGTTACTTAGCAATTAAAA
GTATTTAATATCAAAACTCAAGGTATATAATTCAATTTATTACACTGTTC
AAAATTTATATGTTCATCTTCTCTTTGTAGGAAACTTGTATTAATGTTAT
CTAAAGTGATAGAAAATTATTTATAGGTAATACCAAGTCAATTTAACACT
AGGAACTTTTAAATTATAAGTGTTGTAAGTGTCTCATCAGCCCTAT
CAATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATCAGCCCTGCTTCCATGTCTTGGG
AAATATGCCTNTGNAATGAAGNGNGGNTNTAATTAACCCTGGTTNTTTGG
TTAAAAAAANAAACAAAAAGGGGGGTTTTTTTTTTTTTTAAAAAAAAGAC
AAGGGTGNGGTGGTTNNAAAAAACCACCTTGTGGACCCCCCACCTTTCCC
CGGTTGGCCCTGGGAAAAAATTTTCCCCAAAAAAACCCCCCCCCGGGCCC
CCCCCCCCCTGGAAACCCAATAACCCCCCCTGCCTTTCAAAATTTCCCCG
GCCCCAAAACCCCCTGGCCAAAAAAACCCCCCCCCCCAAAAAAAAATCCC
CCAAAAATGGCCCCCCACGGGGGGGGAAAAAAAATGGAAACCCCCCCCGG
GGGGCCCCCCACCCCTGGGGAAAAAAGACCCCTCTTTGGGGGGGGCAAAA
AAAAAAACCCCCCCTTTTTCCCCCCCCCAGGGGGGGGCCCTCTTTTTTTA
ACACCCCCCGTTTCTATATCCCCAAAAAAAAGAAAGGGCCCCCCCCTTTC
CCAAAAAAAGAAAAATTATCTCCCCCCCCCCCTCCCCCAAAAAAAATATT
TTCTCTCCTCTCCTTGGCCTCCCTTTTCTTCTCCCCACTTTTCTCCCATT
TTTTTTTTCACCACCAAAAATATTTTTTTCTTCTCTCATAAACCCCCCCC
GCTCCCCCCCCACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_b04.b1 MSMg01no173_b04.b1 CHROMAT_FILE:
MSMg01no173_b04.b1 PHD_FILE: MSMg01no173_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:40 2005
         (325 letters)



>mm_chr1_147029005_147029729
          Length = 725

 Score =  580 bits (300), Expect = e-170
 Identities = 315/320 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagtcatatcttaacagaatagcaccatcctaataataagagtcaataatgaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattctagtcatatcttaacagaatagcaccatcctaataataagagtcaataatgaca 465

                                                                       
Query: 65  tacaaaagtaaatctaaagaccattatcttcataaaaccacaatgcacagtatattttac 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tacaaaaataaatctaaagaccattatcttcataaaaccacaatgcacagtatattttac 405

                                                                       
Query: 125 aatcaaatccaacaagcacgaaatagatgtaatctataaaatgtgattatcaatttactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatcaaatccaacaagcacgaaatagatgtaatctataaaatgtgattatcaatttactc 345

                                                                       
Query: 185 agtgctggttcagttattgtttgagtgctcttgtaatgtatttttgaatgtttgccactt 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 344 agtgctggttcagttattgtttgagtgctcttgaaatgtatttttgaatgtttgcaactt 285

                                                                       
Query: 245 ttagtactctagatcactttgtatagctctgagaatgacctgatttgattaagttctttg 304
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 284 ttagtactctagatcactttgtataactctgggaatgacctgatttgattaagttctttg 225

                               
Query: 305 tttttcctaacatgatgaat 324
           ||||||||||||||||||||
Sbjct: 224 tttttcctaacatgatgaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)