BAC Information

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BAC

Clone NameMSMg01-173I12
Chromosome1 (Build37)
Map Location 121,438,355 - 121,438,588
singlet/doubletsinglet
Overlap genenone
Upstream geneClasp1, Tcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b
Downstream geneEpb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173I12.T7 (MSMg01no173_i12.b1)MSMg01-173I12.TJ (MSMg01no173_i12.g1)
ACCAG369113AG369114
length723717
length of high quality
(start - end)
317 (46 - 362)234 (129 - 362)
definitionCHROMAT_FILE: MSMg01no173_i12.b1 PHD_FILE: MSMg01no173_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:13 2005CHROMAT_FILE: MSMg01no173_i12.g1 PHD_FILE: MSMg01no173_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGGGAAAGTTCATTCACAGTAGCTTAATAAAGTACCTAGGAAT
AAACATAATTGAGGCCATTAACGACCTCTACAATAAAAATGCTAAAATAC
TGAAGAAAGTAATTGAAGATACTGAAAGATGAACAGCCCTACCATACTTA
TGGGCTAATATAATAATTGTAAAATGGCTGTGTTACTAAAAGAAAGTTAC
AGACTAAACATAATCTTTGTCAAAATTCTACTGACATTCTCCAGAAATAG
AACAGAAAATCCTATAACTCACATGAAAGCAAAAAAGACCCCCAAATAAA
CAAGACAAACAATTTTTTTTAACACCTCCCCCCCAGAGAGTATCACAGTA
TATGATCTCAAGGTAAACTGTACAACTGTAGTGACAAACGCAGTGGGATT
CTGGCATGAACAGACACAGACCAGTGGCTAGAGTAATAGAACCAGAAGTA
AATGCACACAATTACATCTACCATTTTACAAGTGTTGACAACATAGTTTT
AACTTGGGTAGTGTTGATCTCTTGATAATCACGGATTATTCTTCATCCCC
AGCTGATTAGAAACAGCCAATTTTTAATTAAAAATATATCAACAGCCCCA
ATAGACTGTTTTCAAGGATTCCAAACCTTTCTCTGAAACTTCACAAGCTA
GGCCTCTAATATCTTTGTTTCTC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTAACCAGACTCTAGTCCTGTCGG
CATCAGGAATGTGCCTGGTTCACCCGATATCAGCTTGAGATAAACTAAGC
ACATTCCAGCTTCATCCTCTGACTTGAGTTTTAGGGATCCACTGGTCCAA
GTTGCTGCTCTGAACCAGGCTTCTCTGAGCCCAAATAAAATTGCACCCTG
TAATCCTGGATCTGTCTGCTTTTCTTCAGCCTTTCCACGCTTTCTGCCAA
CAGAGGCCAGTTCTTTTATACTGGATTTCTCTTTAACAGCAGACCCCTCT
GATTCTCTGGCCCACTTAACAGCTCCACCCAGTGATCAGACCTGCTAGCC
TAAGGTCCCTAAAAGATTAGTAAGTGTGTTAAAATTATGTGCAAATCTCC
CATATGACCAGGTTTGTAGGTCTGTAATCTGAAACAGGACTTCCAGTCAG
GAGCAGGGTGGTCTTGAACACGGAACCTTGTGTGTGTGTGTATTATTTTC
TGAATTAACTTATGGCTTTTATTAAATTATCTTATTTCTTTACATTCCAA
ATGTTGCCCCCTTCCTGGTCTCCCCTCCCAGAGTTCTTCACACTATCCCC
ACTCCCTTTCGGTTCTAAGAGGGTGTTCTCCCCAACCCCCGCATTTCCCT
TCCTTGGGGCATCAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_i12.g1 MSMg01no173_i12.g1 CHROMAT_FILE:
MSMg01no173_i12.g1 PHD_FILE: MSMg01no173_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:14 2005
         (234 letters)



>mm_chr1_121438155_121438788
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagcttgagataaactaagcacattccagcttcatcctctgacttgagttttagggat 60
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 atcagcttgagataaactaagtacattccagcttcattctctgacttgagttttagggat 260

                                                                       
Query: 61  ccactggtccaagttgctgctctgaaccaggcttctctgagcccaaataaaattgcaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccactggtccaagttgctgctctgaaccaggcttctctgagcccaaataaaattgcaccc 320

                                                                       
Query: 121 tgtaatcctggatctgtctgcttttcttcagcctttccacgctttctgccaacagaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaatcctggatctgtctgcttttcttcagcctttccacgctttctgccaacagaggcc 380

                                                                 
Query: 181 agttcttttatactggatttctctttaacagcagacccctctgattctctggcc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttcttttatactggatttctctttaacagcagacccctctgattctctggcc 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)