BAC Information

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BAC

Clone NameMSMg01-174K07
Chromosome1 (Build37)
Map Location 48,003,505 - 48,003,692
singlet/doubletsinglet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174K07.T7 (MSMg01no174_k07.b1)MSMg01-174K07.TJ (MSMg01no174_k07.g1)
ACCAG369880AG369881
length720731
length of high quality
(start - end)
315 (46 - 360)189 (125 - 313)
definitionCHROMAT_FILE: MSMg01no174_k07.b1 PHD_FILE: MSMg01no174_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:33 2005CHROMAT_FILE: MSMg01no174_k07.g1 PHD_FILE: MSMg01no174_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGATTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAACTTTGCAGTTTCAT
GAGGTCCCATTTGTCAATTCTAGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTCCCCTGTGCCCATATCTTTGAGGCTTTTCCCCACTT
TCTCCTCTATTTGTTTCACCCACCCCCGCTTTTATGTGAAGTTTCTTGAT
CCACTTAGATTTGACCTTAATACAAGGAGATAGAAATGGATCGATGTGCA
TTCTTCTGAATGTTAACAACCAGTTGTGCCAGTACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGAGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCCCAAGAAGTTCTTTT
ATCCTTGAGAAGACTTTTTG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCTCAAAAAATCAAAACATTCATGTGTATATTTTTAGTTTC
TGCCATAAATATTCATACATAAAGAAATTTACCTTGTGTAAGTGTGTTTC
CATCACATATGCTTATTATGTAAATATCCTGAGATGCTAGAAATTTCCTT
CATTATTACCAATCCTCTTCTTAATATCTTTATTGCAATTTTGAGGACAG
TTTATGGTTCCCTTAGAGTACACAATTCCCAGTCAATGTTAATATTGTCA
GTGAAAAATACAAATTTTTATCAAAATAAAATTCTGCATCTAGGAACTTT
ATTAATTTTTTCTTTTCTCATCCTCACACATACACACATACACACACCCT
CGGTGTGTTAGAGCAAATTTTTCTGTATTGACTAGTCCAATAGTAAATAT
GTCTTGAAATTAATGATATTATAAGACTCTGGTGAGCCTTAGCTTACTGG
GGATCCCCTTAGTGAACAACACAGAGCCAGAATCAATGCAGAAGCAAGAG
AAATTTATTGTTCCAGTGCACTGAGGTCATCCCAGACTTGAAGGAGAGGT
AGCAACTCCTGAGTGGCTTGTTCAGTGGGTTTTTATATGGTTTCCAGGGG
CTGAATAGAGCATCAGCAACTAGGAACAATATGGTTGGCAGAACAGTGCT
TCCTTTTAAACTGATTGGATGTTGGGGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_k07.g1 MSMg01no174_k07.g1 CHROMAT_FILE:
MSMg01no174_k07.g1 PHD_FILE: MSMg01no174_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:33 2005
         (189 letters)



>mm_chr1_48003304_48003892
          Length = 589

 Score =  340 bits (176), Expect = 2e-98
 Identities = 185/188 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   aatttaccttgtgtaagtgtgtttccatcacatatgcttattatgtaaatatcctgagat 61
           |||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 389 aatttaccttatgtaagtatgtttccatcacatatgctaattatgtaaatatcctgagat 330

                                                                       
Query: 62  gctagaaatttccttcattattaccaatcctcttcttaatatctttattgcaattttgag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gctagaaatttccttcattattaccaatcctcttcttaatatctttattgcaattttgag 270

                                                                       
Query: 122 gacagtttatggttcccttagagtacacaattcccagtcaatgttaatattgtcagtgaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gacagtttatggttcccttagagtacacaattcccagtcaatgttaatattgtcagtgaa 210

                   
Query: 182 aaatacaa 189
           ||||||||
Sbjct: 209 aaatacaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)