BAC Information

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BAC

Clone NameMSMg01-174M07
Chromosome1 (Build37)
Map Location 79,301,110 - 79,301,394
singlet/doubletsinglet
Overlap genenone
Upstream geneSgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174M07.T7 (MSMg01no174_m07.b1)MSMg01-174M07.TJ (MSMg01no174_m07.g1)
ACCAG369969AG369970
length732724
length of high quality
(start - end)
311 (45 - 355)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no174_m07.b1 PHD_FILE: MSMg01no174_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:43 2005CHROMAT_FILE: MSMg01no174_m07.g1 PHD_FILE: MSMg01no174_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATACCTCAGACTGAGTAATTAGGATTATATGCTGTACCAACAAGGT
TGGCTATACGTCTTATATTTTTAACACAAAATACATGAATGGAGGCTGTA
CTGGCTGGTTTTGTGTGTCAGTTTGACACAAGTTGAGTTATCACAGATAA
AGGAGCCTCCCTTGAGGAAATGCCTCCATGAGATCCAGCTATAAGACATT
TTTCTCAATTAGTGGTCAAGGGTGGTAGGGCCCATTGTGGGTGGTGCCAT
CCCTGGGCTGGTAGTCTTGTGTTCTATAAGAAAACAAGCTGAGCAAGCCA
GGAGAATTTTTTTTTTCCGTAACCTNGCTCCATGGCCTTTGCATCAGCTG
CTTCCTGACCTGCTCGAATTCAAAAAAAGACTTCCTTGGTGATGAACAGC
AGTGTGGAAAAGTAAGCTGAATAAACCCTTTTCTCCCCAACTTGCTTCTT
GGTCATGTTTGCGCACGAATAGAAACTCTGATTAAGACAGAGGTTCTGAT
TCTTCTAAACTTATAATTGGTTGTCTCATGAACGCTTTTAGTATTCCCTA
TTTTCCGAAACCCATTGTTTTATTGAACACTTTTGACGGCCCCATCTTCT
GACCCTGCACATACCAACTTTATCCTCTGCAACCCTTCTGAATTGTTCCC
CACTATGTATTATTACACACCTGAAATTCTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATAGACTTTTAAAATTCTCTC
TGACAATCTTTGCCTTTTATTTAACCCAATTGGGCTGTTTAATAAAAATA
TTAATACTTCAATATTCAGCATTAAGACTTCAATATACTGCACATCTAGC
TTTTATTATTATTTCAGCTTCAATCATTCTTTTACTCGCTTCTTAGGAGT
TAATTTTTTATCATTCCATTTTAATATTTAATGGTTCTTCAATAATTATT
CTTCAGTGTTTTAGTGCTTCTTGCATAAAATAAACACTGCAATTCTCACC
TTCTATTTAGGATTATTATTTTCCCANCCTGACCCTCAAATATAAAAACC
TTGCAAATGTATAGTTAATTCCACCTGCTAAAACATATTTAAGCTGTATG
TCACAAATATTTCATGTCAATATTAATTATAAACTTCCAACACAGTGTTT
GGGATTTTACAACATTTATTTTCATTTTAGAATTTTGTAAGAGCTAGTTT
ATTTGTGTGTGTGTGTAAGAGAGACAGAGACCGAGAGACCGAGAGACCGA
GACTGAGACAGAGACTGAGACAGAGACCGATATTGAGACAGAAACCGAGT
ACTGATACTGATACTGATACCGAGACTGAGACCGATATCGACACAGATGT
TTACCACCTTCATAGGTTATAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_m07.g1 MSMg01no174_m07.g1 CHROMAT_FILE:
MSMg01no174_m07.g1 PHD_FILE: MSMg01no174_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:43 2005
         (285 letters)



>mm_chr1_79300910_79301594
          Length = 685

 Score =  497 bits (257), Expect = e-145
 Identities = 278/285 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatagacttttaaaattctctctgacaatctttgccttttatttaacccaattgggct 60
           |||||||||||||||||||||||||||||||||||||||||||  |||  ||||||||||
Sbjct: 201 catatagacttttaaaattctctctgacaatctttgccttttaagtaaaacaattgggct 260

                                                                       
Query: 61  gtttaataaaaatattaatacttcaatattcagcattaagacttcaatatactgcacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttaataaaaatattaatacttcaatattcagcattaagacttcaatatactgcacatc 320

                                                                       
Query: 121 tagcttttattattatttcagcttcaatcattcttttactcgcttcttaggagttaattt 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tagcttttattattatttcagcttcaatcgttcttttactcgcttcttaggagttaattt 380

                                                                       
Query: 181 tttatcattccattttaatatttaatggttcttcaataattattcttcagtgttttagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatcattccattttaatatttaatggttcttcaataattattcttcagtgttttagtg 440

                                                        
Query: 241 cttcttgcataaaataaacactgcaattctcaccttctatttagg 285
           ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 441 cttcttgcagaaaatgaacactgcaattctcaccttctatttagg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)