Query= MSMg01no174_n11.b1 MSMg01no174_n11.b1 CHROMAT_FILE:
MSMg01no174_n11.b1 PHD_FILE: MSMg01no174_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:48 2005
(315 letters)
>mm_chr1_100415028_100415741
Length = 714
Score = 281 bits (145), Expect = 5e-80
Identities = 160/165 (96%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctccagcataaccaggggtctctgcaacagctttactcccacctatgtattca 63
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctccagcataaccagtggtctctgcaacagctttactcccacctatgtattca 263
Query: 64 ccaaaaataggcatgccaggttccagtagtgtccaccttggtgatagagggaggtctggc 123
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 264 ccaaaaa-aggcatgccaggttccagtagtgtccactttggtgatagagggaggtctggc 322
Query: 124 ccaggggaccagaaacagacatgctgtggcactgccccagcccac 168
|||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 323 ccaggggaccagaaacaggcatgctgtggcactgccccaggccac 367
Score = 279 bits (144), Expect = 2e-79
Identities = 150/152 (98%)
Strand = Plus / Plus
Query: 161 cagcccacttgggatgattgtcagcaattgttgcagattctctttaccacagaggagagg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cagcccacttgggatgattgtcagcaattgttgcagattctctttaccacagaggagagg 616
Query: 221 aggcaccagctccagaacattgcacaaaatggaaacagaaggaatgtagaccaattcatt 280
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 617 aggcaccagctccagaacattgcacaaaatggaaacagaaggaacgtagaccaattcatt 676
Query: 281 tctttgattctagagttactctgataccaaaa 312
||||||| ||||||||||||||||||||||||
Sbjct: 677 tctttgagtctagagttactctgataccaaaa 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 714
Length adjustment: 9
Effective length of query: 306
Effective length of database: 705
Effective search space: 215730
Effective search space used: 215730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_n11.g1 MSMg01no174_n11.g1 CHROMAT_FILE:
MSMg01no174_n11.g1 PHD_FILE: MSMg01no174_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:48 2005
(637 letters)
>mm_chr1_100483253_100484289
Length = 1037
Score = 1096 bits (567), Expect = 0.0
Identities = 628/667 (94%), Gaps = 31/667 (4%)
Strand = Plus / Minus
Query: 1 tctagggtttctgattaaaacatcctgtcaatcatctgtattttgcggcggaatcaacaa 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 894 tctagggtttctgattaaaacatcctgtcaatcatctgtattttgcggtggaatcaacaa 835
Query: 61 cgatatatggaaacagaaagattctgaaacatgcctgttcttagtgggcttgctttgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 cgatatatggaaacagaaagattctgaaacatgcctgttcttagtgggcttgctttgcat 775
Query: 121 gcttgaagtcctgggttccatttccatcatcacatatgctggataaaatattaaatccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gcttgaagtcctgggttccatttccatcatcacatatgctggataaaatattaaatccct 715
Query: 181 gaattttcagcacctgaggaaatggcagaagaatcaaaatttcagagccagccttactac 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 714 gaattttcagcacctgaggaaatggcagaagaatcaaaatttcagaaccagccttactac 655
Query: 241 catag--------------------------gagagtcggtgcaggaatgggggagcact 274
|||| |||||||||||||||||||||||||||||
Sbjct: 654 aataggaagtttcaggcagcctgggatgtatgagagtcggtgcaggaatgggggagcact 595
Query: 275 tttatcactagaaaattctggtgaataaaatgacacttgcagaaagctaactttattctg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tttatcactagaaaattctggtgaataaaatgacacttgcagaaagctaactttattctg 535
Query: 335 agagtcatttttattccaaggttgtttgcttgttgcatattgatatcttattgcttattc 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agagtcatttttattccaaggttgtttgcttgttgcatattgatatcttattgcttattc 475
Query: 395 ttttgtgaaatgatggtaagtttaggggctatttattttattttaattaatcaaataaac 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttttgtgaaatgatggtaagtttaggggctatttattttattttaattaatcaaataaac 415
Query: 455 ttgctatactaaggcaaataaactttcattgtttatttgaattttctgtcttgttgagat 514
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttgctattctaaggcaaataaactttcattgtttatttgaattttctgtcttgttgagat 355
Query: 515 cttgatgaatcattgt----ctccctttttttattattattctgaaaatcttcaactgtg 570
|||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 354 cttgttgaatcattgtttgtctccctttttt-attattattctgaaaatcttcaactgtg 296
Query: 571 tgaaacctagtgtggttcaaacagagaaattcttgtatgaaaaggttgtgtggggtataa 630
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||
Sbjct: 295 tgaaacctagtgtggttcagacagagaaattcttgtatgaaaaggttttgtggggtgtaa 236
Query: 631 tatccac 637
|||||||
Sbjct: 235 tatccac 229
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
