BAC Information

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BAC

Clone NameMSMg01-175C06
Chromosome1 (Build37)
Map Location 27,014,518 - 27,014,641
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik
Downstream geneLOC677427, LOC100040952, EG433281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175C06.T7 (MSMg01no175_c06.b1)MSMg01-175C06.TJ (MSMg01no175_c06.g1)
ACCAG370221AG370222
length737736
length of high quality
(start - end)
39 (73 - 111)124 (146 - 269)
definitionCHROMAT_FILE: MSMg01no175_c06.b1 PHD_FILE: MSMg01no175_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:09 2005CHROMAT_FILE: MSMg01no175_c06.g1 PHD_FILE: MSMg01no175_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTCTTTTGCCACATGAACTCTAATATTTTTCTCAGTAAAATTTCCTT
TCAACCAAACAATCAGTATCCCCTCCTTGTTTCTGAATGTCAGCCAGTGA
AAAGCATAACCATTGCAGAGCACATGTTAATCCATTAATAGCATGTTCAC
AGATGATCCAGACACACTCTGCCAGTTTTCTCAGCCTTATTAATCCCAGA
ATAATATACACTATTTACTCTGTTTGGAGAGATGTAAGTTGTGATTCTGA
TTTTCCCTTAAGATTGTGTTCAATTTTACATTTTAATATTTATCTTCATG
CAGTGAGAGATACACACATCATTCTTCATGATGAAGACATGATGAGAGTC
TAGAGAGCATCACCCCCTGTTGAGAACACTAACTGAGCTTGCAGAGGACC
TGAGTTCAGTTTCCAATATTTACATAGAGTGATTCATATCTTCCTGTAAC
TACCACTCCAGGTGATTAGATGCTGTCTTCTAGGATCCACAAGCATTGCA
CTCATGCACATAATCCTCATACCTAGATACTTATATGAAGAAAATCAAAT
ATTAAATGGAGATTTGATGTGTTTTTGTACCAAAATATACATTTAAATAT
TTGAATTCCTATAAGTATAAGAAGCTACCTATTTTAAATATTCACTTTAA
TTTAAGAGTTTAAGCATTTATGCCTACTGAATTTTTN
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACATTCTCCTGGCTTTTGCTTTTCCAGGGT
AGCATATGTCTTGCCCCTCTAATTCTCTAACTTATCTAAGAAGAGATGCT
GATTATTCTTGCTAATCCAGACTGTACGACTTTGGCTATATATTGAGGAT
TATTTTAAGTTTTCAACTAAAAATTAAATCTCTTTTCATTTTAAATCTGT
AGATTAGAATTGCCTTCCAGTCAAAAAACTTGCTAGGGGGTTTTCTTTAA
AACACCTACTGATTTTAGCATCTCTGCCTCGTGTTTTGATAAGAATGCTT
ATAGATANGTTTCCCCCCCCCCACACAATATTTCCGGTGTTATGATCCTT
ATTTAACACCCCCCCACTACAAACAACACACTGAACTAGTGTACATGCTT
CCTTCTAGATGTCACTGTTAATGACAGGCTCTCTTCTGCTTCCACAGGGG
TCCACTTGTTTACATGTACCTGTTTGTATCTTGATGATTTCACAACTTGC
TCCATTCTTTGATGTTTTGCACCTTTATTCTATGATGTGTCTGTGCATGT
TTCTGTGTTATTTCCATACTTGTATTCTTATAGTCCTTGTAGATATCTGC
AAGATAGCCATTTGTGTCATATTTGAGAAAGATAAAACCGTTCCCTTCCT
ACCGTTTTAGCTTCTACTGTTCTCTGCTGTGCAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_c06.g1 MSMg01no175_c06.g1 CHROMAT_FILE:
MSMg01no175_c06.g1 PHD_FILE: MSMg01no175_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:09 2005
         (124 letters)



>mm_chr1_27014318_27014841
          Length = 524

 Score =  224 bits (116), Expect = 1e-63
 Identities = 122/124 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctgattattcttgctaatccagactgtacgactttggctatatattgaggattattt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 atgctgattattcttgctaatccagactgtacgactttggttatatattgaggattattt 265

                                                                       
Query: 61  taagttttcaactaaaaattaaatctcttttcattttaaatctgtagattagaattgcct 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 taagttttcaactaaaaattaaatctctttccattttaaatctgtagattagaattgcct 205

               
Query: 121 tcca 124
           ||||
Sbjct: 204 tcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)