BAC Information

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BAC

Clone NameMSMg01-175C07
Chromosome1 (Build37)
Map Location 94,582,910 - 94,583,476
singlet/doubletsinglet
Overlap genenone
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
Downstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175C07.T7 (MSMg01no175_c07.b1)MSMg01-175C07.TJ (MSMg01no175_c07.g1)
ACCAG370223AG370224
length719732
length of high quality
(start - end)
315 (47 - 361)569 (72 - 640)
definitionCHROMAT_FILE: MSMg01no175_c07.b1 PHD_FILE: MSMg01no175_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:09 2005CHROMAT_FILE: MSMg01no175_c07.g1 PHD_FILE: MSMg01no175_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAGCTCCAGCACCATGTCTGCCTGCATGCTGCCATGCTTCCTG
CCATGATAATGGTCTAAATCTCTAAAACTGTAAACCAGCCCCAATGAAAT
GTTTCCTTTCTAAGAGCTGCTGTGGTGTCCCTTCACAATAGATCCCTAAC
TAGGACACATGCCCAAAGGTCACCCAGATCTAGATAAGGCCTCCTCGTGG
AGACTCTCTTCGAAGGTGATTCTATGTTGTGCTAAGATGACAACTAAAAC
CTAAGCACCACACCAGCATAGTAACTTGTTGGAATAGGTTACCTGAGACC
CCTGGCCCTTTTTTTCACCCCACCCCCATGACAAATGCACTGACCAAGGC
TTTCATCTTCAACCCCTGCTGACATTGAGGCCTCAGCTTCCTGTGTTTCT
GACTCAGACCACTTGAGAAGTCTGGAACTAGGGGCAGTCAGGGTGTCTCT
TAGCTGGTTCTCAGAGTGAGGCTCAGCCTGCTTGTGTAGTCAGAACTGGG
GGTACGTTAAAGGTGTTTGCATAGATCCTGGTAGAACTTCATGCAAACGA
AGGACTATGTTTGCGCCAGTCACAGCCTTTTGCTGGGTCTTGAGGAGAAA
TGCTTGCTTATGCCCTAAGTGAGAATAGCTACAAAGTCATCTTGAGTTCA
ACAATGCCTTTGTGGTGAN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCCTCACCTGTGCCATGTGTAACACAGC
TTGTGTGGGAAAGCCCAGAAGTTACAAAGGAGAGAGATGCAGCTGCTATA
GCAATGGCCCACAAAGGGCCATGAGCCTCGGGTTCCTGTGTTTTCATCCT
CATTCCTTCCTGGCCCTCTAGTTAGCACACTCACTCTCAAGCACGCTATA
ACAGGAATCTCTCTGGCGGGGGCCTCCATATTAACAGTTGTAAAAACTAA
CAAACCAACAAAAAACAGAGACTTATTCCCCTCTGGTGTCTCTTTGCTTT
TCTCTTCTTCCTCTTCTTTTGCCCACCATATTCAACCTTTGTCTAGCTGG
TTCTGTGTGCCCCGCCNCCTTGTAGGACTCTGACTAGATGTATATTCCCA
CCTCAGTGGTCTACCTTCTCCTGGACTGCTGCCAGCTGTCAGCCTTGCAA
CACACACCTTGTCACCTTCTGTCTATCTATCTGCTTTGGGACAGAGCTTG
GGACACAGTAGGAGCTCAATGGTTAGGTGAATCTGGGACATGGGGGCTCA
AAAAGCACTTTCCTACTATGTGAATGCCAGGAGCCATAGAGAAGGGATGG
GATGGCGGTGTACCTTGTTCACTGCGGTGACAAAATGCCTAATGAGGTGT
GAATTATGTGCAGAAAGGTTTATTTCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_c07.g1 MSMg01no175_c07.g1 CHROMAT_FILE:
MSMg01no175_c07.g1 PHD_FILE: MSMg01no175_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:10 2005
         (569 letters)



>mm_chr1_94582708_94583676
          Length = 969

 Score = 1044 bits (540), Expect = 0.0
 Identities = 560/567 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   cctcacctgtgccatgtgtaacacagcttgtgtgggaaagcccagaagttacaaaggaga 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cctcacctgtgccatgtgtaacacagcttgtgtgggaaagcccagaagttacaaaggaga 262

                                                                       
Query: 63  gagatgcagctgctatagcaatggcccacaaagggccatgagcctcgggttcctgtgttt 122
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 263 gagatgcagctgctatagcaatggcccacaaagggccatgagccttgggttcctgtgttt 322

                                                                       
Query: 123 tcatcctcattccttcctggccctctagttagcacactcactctcaagcacgctataaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcatcctcattccttcctggccctctagttagcacactcactctcaagcacgctataaca 382

                                                                       
Query: 183 ggaatctctctggcgggggcctccatattaacagttgtaaaaactaacaaaccaacaaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggaatctctctggcgggggcctccatattaacagttgtaaaaactaacaaaccaacaaaa 442

                                                                       
Query: 243 aacagagacttattcccctctggtgtctctttgcttttctcttcttcctcttcttttgcc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aacagagacttattcccctctggtgtctctttgcttttctcttcttcctcttcttttgcc 502

                                                                       
Query: 303 caccatattcaacctttgtctagctggttctgtgtgccccgccnccttgtaggactctga 362
           ||||||||||||||||||||||||||||||||||||||  |   ||||||||||||||||
Sbjct: 503 caccatattcaacctttgtctagctggttctgtgtgccttgaagccttgtaggactctga 562

                                                                       
Query: 363 ctagatgtatattcccacctcagtggtctaccttctcctggactgctgccagctgtcagc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctagatgtatattcccacctcagtggtctaccttctcctggactgctgccagctgtcagc 622

                                                                       
Query: 423 cttgcaacacacaccttgtcaccttctgtctatctatctgctttgggacagagcttggga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cttgcaacacacaccttgtcaccttctgtctatctatctgctttgggacagagcttggga 682

                                                                       
Query: 483 cacagtaggagctcaatggttaggtgaatctgggacatgggggctcaaaaagcactttcc 542
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cacagtaggagctcaatggctaggtgaatctgggacatgggggctcaaaaagcactttcc 742

                                      
Query: 543 tactatgtgaatgccaggagccataga 569
           |||||||||||||||||||||||||||
Sbjct: 743 tactatgtgaatgccaggagccataga 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)