Query= MSMg01no175_i08.b1 MSMg01no175_i08.b1 CHROMAT_FILE:
MSMg01no175_i08.b1 PHD_FILE: MSMg01no175_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:37 2005
(278 letters)
>mm_chr1_23202870_23203547
Length = 678
Score = 383 bits (198), Expect = e-111
Identities = 245/278 (88%), Gaps = 31/278 (11%)
Strand = Plus / Minus
Query: 1 atatccagctgcttcctgccaagctgttaaacacagctgtttgcccatcacattcaaaca 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 302 atatccagctgcttcctgccaagctgttaaacacagctgtttgcccattacattcaaaca 243
Query: 61 actagatgtgtcattgtacaaagatcttttcttcacacggtttctctctctctctctttc 120
||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 actagatgtgtcattgtacaaagatcttttcttcacacgg-------------------- 203
Query: 121 tctctttctctctctctctctctctctctctctctctctctctttctctctctctctctc 180
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 202 ----tttctctctctctctctctctctctctctctctctctct--ctctctctctctctc 149
Query: 181 tctctctctctctctctcggaagctcttagctctgtgatatctgatctacctggaaacat 240
|||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 148 tctctctctc-c---ctcggaa-ctcttagctctgtgatatctgatctacctggaaacat 94
Query: 241 ttattcttttgttcagcacacattcttccacttggtaa 278
||| ||||||||||||||||||||||||||||||||||
Sbjct: 93 ttactcttttgttcagcacacattcttccacttggtaa 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 41
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no175_i08.g1 MSMg01no175_i08.g1 CHROMAT_FILE:
MSMg01no175_i08.g1 PHD_FILE: MSMg01no175_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:37 2005
(289 letters)
>mm_chr1_23081799_23082487
Length = 689
Score = 505 bits (261), Expect = e-147
Identities = 282/289 (97%)
Strand = Plus / Plus
Query: 1 aaaactaaatatgttggcttttatatgcataccatcattttgttcctccctgtacttaat 60
|||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||
Sbjct: 201 aaaactaaatatgtcgggttttatatgcataccatcattttggtcctaaatgtacttaat 260
Query: 61 agagttccatgattactagcttgggagttctttttttggattgttccttacaaaaataat 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 agagttccatgattactagcttgggaattctttttttggattgttccttacaaaaataat 320
Query: 121 gatgcataagacaacagaattttggaacatcaattttactgtgaagagatataatgagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgcataagacaacagaattttggaacatcaattttactgtgaagagatataatgagaa 380
Query: 181 tctggacaagatccacattgagttcacagagcttccagaacatttcctaaatggttccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggacaagatccacattgagttcacagagcttccagaacatttcctaaatggttccag 440
Query: 241 attcaattttgagcacaagtgagcttctcacaatttattgtaagtacta 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcaattttgagcacaagtgagcttctcacaatttattgtaagtacta 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
