TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAATTACGCAACAGGATCTAAAATGCCTCTGTTAAGATGAAGC
AAATAAAAACATGGTGTTAGTCTAAACCCAGGACAAAATCTACGGAGTGA
GAATCCTTTCCCTCTTCACTAACTCATAATCCTCCTGAGGCAGCAAAATT
TCATTCCAGGTGAAGAAATGTGTGTAACTTTGCATGAACACGATCATAAT
GCATAGACAATGGTAGTTAGCAATATTAACATTAGAATTATACTTACAGA
AATTGTTTCAGAATGAAGAGGGATAGGAAACTGCCTGCCTGTTTACCATT
GAATCTCAGTTGACTTTTGCAACTATTTTTATAAAAGTAGTATTTATGGC
TAACACTACAAAATACCCATGCAAATTATAAACATATTAGCATAATACTG
TGGTTAAAATACTAATTTTCACTCACAAAACTAATGTAAGACTAATTATC
TTAAGTGCTCCCATGTTGAAAATGAGCAAATTTTTGGTCTTGAAGTAACA
GCAGTATATATTTATGTATTTGTAATTAGAAAAACATTGTCTCTCTGAAT
CCTTAATCTAATGCCCTACTGGGAAATTACATCTTTATACTTAAAAAGCC
AATGGAAATGTACAAGATGTGAGTTATTTTTAGCCATATTATACTTGTTA
AACCTCTCATTTTGTAA

GCGACTGAAGCGTGTAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAGAAGAACTAAGTGTACTG
GCTAGTTTTGTGTCAACTTGACACAGCGCGGAGTGATCACAAAAAAAGGA
GCTTCATTTGATAAAATGCCTCCATGACATCCAACTGTAAGGTATTTTCT
CAATTACTGATCCCCGAGGAAAGGCCCCTTGTGGGTGGGACCATCTCTGG
GCTGCGAATCTTGAATCTACAACACAGCAGGCTGATTAAGACCGGGCAAG
TACGCCACCAAGGCAAATCTTTCCTTGGACTCCGCAACAACTCCTGCTTC
CTGACCAGATTTTTTATTTTCCCCACCCCCCCGTTGATCAAGAGCAGTAT
GGAAGCGTAAGCCAAACCAAGCCAATAACACCAATACTTGCTTCTTGGTC
AGGATGTATGTGCAAGAAAACAAACCCTGACCAATACGGTAAGGTACTTT
GTACGCGGGCGCATCCACCTAGCTCCATAGACCCTTAACGCACTTGAAAC
CGCGTATGATAATTACCCACAACCCTTGTATGCCACCCCCCACTACTTTC
TTATGTTCTTCTAAAGCCCGCCCCCCCCCTTTTTCTTTTCTCCCCCTTTC
CTCTCTCATCTATTGTCTCAACTCCCCGGCCCGCGAATCTCCGTATACCA
CTTTCCTTCTAACCATCTTCTCTCCTCCTCCTTTATCCCCATCTTC

Query= MSMg01no175_p17.b1 MSMg01no175_p17.b1 CHROMAT_FILE:
MSMg01no175_p17.b1 PHD_FILE: MSMg01no175_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:10 2005
         (592 letters)



>mm_chr1_70096989_70097981
          Length = 993

 Score = 1038 bits (537), Expect = 0.0
 Identities = 580/595 (97%), Gaps = 5/595 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccaggacaaaatctacggagtgagaatcctttccctcttcactaactcataatcctcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 793 acccaggacaaaatctacggagtgagaatcctttccctcttcactaactcataatcttcc 734

                                                                       
Query: 61  tgaggcagcaaaatttcattccaggtgaagaaatgtgtgtaactttgcatgaacacgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgaggcagcaaaatttcattccaggtgaagaaatgtgtgtaactttgcatgaacacgatc 674

                                                                       
Query: 121 ataatgcatagacaatggtagttagcaatattaacattagaattatacttacagaaattg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 673 ataatgcatagacaatggtagttagcaatattaacattaaaattatacttacagaaattg 614

                                                                       
Query: 181 tttcagaatgaagagggataggaaactgcctgcctgtttaccattgaatctcagttgact 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tttcagaatgaagaggggtaggaaactgcctgcctgtttaccattgaatctcagttgact 554

                                                                       
Query: 241 tttgcaacta-tttttataaaagtagtatttatggctaacactacaa-a-atacccatgc 297
           |||||||||| ||||||||||||||||||||||||||||||| |||| | |||   ||||
Sbjct: 553 tttgcaactattttttataaaagtagtatttatggctaacaccacaacatata--gatgc 496

                                                                       
Query: 298 aaattataaacatattagcataatactgtggttaaaatactaattttcactcacaaaact 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaattataaacatattagcataatactgtggttaaaatactaattttcactcacaaaact 436

                                                                       
Query: 358 aatgtaagactaattatcttaagtgctcccatgttgaaaatgagcaaatttttggtcttg 417
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aatgtaagactaattatgttaagtgctcccatgttgaaaatgagcaaatttttggtcttg 376

                                                                       
Query: 418 aagtaacagcagtatatatttatgtatttgtaattagaaaaacattgtctctctgaatcc 477
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 375 aagtaacagcagtatatatttatgtatttgtaattagaaaaacatcgtctctctgaatcc 316

                                                                       
Query: 478 ttaatctaatgccctactgggaaattacatctttatacttaaaaagccaatggaaatgta 537
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 315 ttaatctaatgccctactgggaaattacatctttacacttaaaaagccaatggaaattta 256

                                                                  
Query: 538 caagatgtgagttatttttagccatattatacttgttaaacctctcattttgtaa 592
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 255 caagatgtgagttatttttagccatattattcttgttaaacctctcattttgtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 993
Length adjustment: 10
Effective length of query: 582
Effective length of database: 983
Effective search space:   572106
Effective search space used:   572106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)