Query= MSMg01no176_a13.b1 MSMg01no176_a13.b1 CHROMAT_FILE:
MSMg01no176_a13.b1 PHD_FILE: MSMg01no176_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:17 2005
(278 letters)
>mm_chr1_93935100_93935777
Length = 678
Score = 518 bits (268), Expect = e-151
Identities = 274/276 (99%), Gaps = 2/276 (0%)
Strand = Plus / Plus
Query: 1 ggacccagtaagggcaggcactgccagcaaactgtatctctcagagacactgtaatgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggacccagtaagggcaggcactgccagcaaactgtatctctcagagacactgtaatgtgc 260
Query: 61 cagcacatgtgaaggagcttcccaccccacccctgctcctctcatgaacacatgccagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcacatgtgaaggagcttcccaccccacccctgctcctctcatgaacacatgccagct 320
Query: 121 aca-aacactggctacctgccctgcagctctactcatgacgcttgcctggatcaatgaac 179
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaa-actggctacctgccctgcagctctactcatgacgcttgcctggatcaatgaac 379
Query: 180 tccttgccataataacatattattatatgacagttggctttctgccaactgggatatgtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccttgccataataacatattattatatgacagttggctttctgccaactgggatatgtt 439
Query: 240 cttagggcctggcagatctggctatgattttccagc 275
||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttagggcctggcagatctggctatgattttccagc 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no176_a13.g1 MSMg01no176_a13.g1 CHROMAT_FILE:
MSMg01no176_a13.g1 PHD_FILE: MSMg01no176_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:17 2005
(497 letters)
>mm_chr1_94080839_94081735
Length = 897
Score = 922 bits (477), Expect = 0.0
Identities = 492/497 (98%)
Strand = Plus / Minus
Query: 1 aactggagcggcccaactcagaaagcaaacaaaaggtcatgacatcaaatcccaggctta 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aactggagtggcccaactcagaaagcaaacaaaaggtcatgacatcaaatcccaggctta 484
Query: 61 caacatccagcaaaaagtgacaacagaagtccacttaaggaatccagtcagagttctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caacatccagcaaaaagtgacaacagaagtccacttaaggaatccagtcagagttctcag 424
Query: 121 agcacagtgtctcctcaggtaaggcttccaagtaaacagacaaatagcagcagcttgata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agcacagtgtctcctcaggtaaggcttccaagtaaacagacaaatagcagcagcttgata 364
Query: 181 tcatcaggtcgggcacacttatccaggagaaactgactgtgtaagtcaaagcagtcaacc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 363 tcatcaggtcgggcacacttatccaggagaaactgactgtgtaagtcgaagcagtcaacc 304
Query: 241 agcattttcaattgagagagtctaagtacaagtcctcatcttgtaggagcggctcctttc 300
|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 303 agcattttcaattgagagagtctaagtacaagtcctcatcatggaggagcggctactttc 244
Query: 301 tcttccctactgcaggcattttcatattgtgggataaacaatagtaatctctgttgtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tcttccctactgcaggcattttcatattgtgggataaacaatagtaatctctgttgtaaa 184
Query: 361 tagtctaccttctagctgttctcaaggacacaatgtcttcaatgcccttagttccttgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tagtctaccttctagctgttctcaaggacacaatgtcttcaatgcccttagttccttgct 124
Query: 421 gttttccctttctgtgttacagagccagagagcagcctgacccaggacagggggtttaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gttttccctttctgtgttacagagccagagagcagcctgacccaggacagggggtttaga 64
Query: 481 ggacacttgacataaac 497
|||||||||||||||||
Sbjct: 63 ggacacttgacataaac 47
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
