Query= MSMg01no176_h21.b1 MSMg01no176_h21.b1 CHROMAT_FILE:
MSMg01no176_h21.b1 PHD_FILE: MSMg01no176_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:18 2005
(691 letters)
>mm_chr1_15606154_15607245
Length = 1092
Score = 1284 bits (664), Expect = 0.0
Identities = 685/692 (98%), Gaps = 1/692 (0%)
Strand = Plus / Minus
Query: 1 tgtaatcagggagggcctctaatatcctaaagcttggagaatgagttttgggcagtataa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 892 tgtaatcagggagggcctctaatatcctaaagcttgaagaatgagttttgggcagtataa 833
Query: 61 tctaaagcaaattactgattcaactattcatttcaatagattgaattttgtctttacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tctaaagcaaattactgattcaactattcatttcaatagattgaattttgtctttacagg 773
Query: 121 cagatattcagactctcgtctgggcagaaccatgacaaagcagaggaaattgcactgaag 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 772 cagatattcagactctcgtctgggcagaaccatgaaaaagcagaggaaattgcactgagg 713
Query: 181 cacaggaggaggcttgcctgagggggcctccaagttagagtacaaaaggcacaaacaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 cacaggaggaggcttgcctgagggggcctccaagttagagtacaaaaggcacaaacaggc 653
Query: 241 agagtaagaaatacatgatgctatttcagctctcaagaacccatgtctcctgagtgcttg 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 652 agagtaagaaatacatgatgctatttcagctctcaagaacccatgcctcctgagtgcttg 593
Query: 301 tagggaaaattcaccgacattattttcggtccacacttgagtctgagactttggggaaag 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 592 tagggaaaattcaccgacattatttttggtccacacttgagtctgagactttggggaaag 533
Query: 361 cagtgcctcagcatccccattcttagagggcttaaaaatgaacgatctcagtttggcttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cagtgcctcagcatccccattcttagagggcttaaaaatgaacgatctcagtttggcttg 473
Query: 421 aaaactatagaagagaatatatttttagtataatagatctcctcaatctgctcaaaaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaaactatagaagagaatatatttttagtataatagatctcctcaatctgctcaaaaagt 413
Query: 481 ggaaccacagaaaaagcaaacagatggaaggccatgtgctgttttgtcacaggtccaagg 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ggaaccatagaaaaagcaaacagatggaaggccatgtgctgttttgtcacaggtccaagg 353
Query: 541 ttttaaactagataaacactgaaaccctgtagccataaatctgtcctttccatagcaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttttaaactagataaacactgaaaccctgtagccataaatctgtcctttccatagcaaaa 293
Query: 601 tcctaggagattatcagaacttctctgatcaaatattcacact-aaaaaaaaaaaatcca 659
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 292 tcctaggagattatcagaacttctctgatcaaatattcacactaaaaaaaaaaaaatcca 233
Query: 660 ggaagccctgccaaactctctgccatttaata 691
||||||||||||||||||||||||||||||||
Sbjct: 232 ggaagccctgccaaactctctgccatttaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1092
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1082
Effective search space: 736842
Effective search space used: 736842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_h21.g1 MSMg01no176_h21.g1 CHROMAT_FILE:
MSMg01no176_h21.g1 PHD_FILE: MSMg01no176_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:18 2005
(736 letters)
>mm_chr1_15581885_15583020
Length = 1136
Score = 1379 bits (713), Expect = 0.0
Identities = 730/736 (99%)
Strand = Plus / Plus
Query: 1 tggatgaccatgaactcacagagatccccctacctttgtgtcccaaatgctaggatcaat 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tggatgaccatgaactcacagagatccacctacctttgtgtcccaaatgctaggatcaat 260
Query: 61 ggtgtgggtcaccatgcccagctcattttgattcctacaactgagaccctgtcttaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtgggtcaccatgcccagctcattttgattcctacaactgagaccctgtcttaaaca 320
Query: 121 tgtatcacacatttgggcacatgtaagaccaaggacacaagagaatggcatgttccagaa 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaacacacatttgggcacatgtaagaccaaggacacaagagaatggcatgttccagaa 380
Query: 181 aaacagcagttcaacttaaccagactgcagctgggtgagttgattcagtcatatgggggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacagcagttcaacttaaccagactgcagctgggtgagttgattcagtcatatgggggt 440
Query: 241 cgggtggttaaagtcatgtgggaacatccctatccacacagtagtggtaacatgtgaaag 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 cgggtggttaaagtcatgtgggaacatccctgtccacacagtagtggtaacatgtgaaag 500
Query: 301 aactgaaacagaagggtggggtgatcaaattatgttagaagaagtgcggaaaagtaagca 360
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgaaacagaagggaggtgtgatcaaattatgttagaagaagtgcggaaaagtaagca 560
Query: 361 aaggccaaaaagagaaaaaggaagtttccccagagtcccacaactaacataagcaaatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggccaaaaagagaaaaaggaagtttccccagagtcccacaactaacataagcaaatag 620
Query: 421 agattctttaccccagcctttaactactaggttactacaagtgtcctgttccctcactgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agattctttaccccagcctttaactactaggttactacaagtgtcctgttccctcactgt 680
Query: 481 gaccagacacacagtctacgaaatctagtctgttttaagctattaaatgtcaccaaaaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaccagacacacagtctacgaaatctagtctgttttaagctattaaatgtcaccaaaaca 740
Query: 541 tgaaaactgttcatggtcattagaaggcacaattctagtttggaagaataaatacctagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaaaactgttcatggtcattagaaggcacaattctagtttggaagaataaatacctagg 800
Query: 601 aacacacagagagacaatttaattaaataaaacttctgttagtgaagattgagataggta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aacacacagagagacaatttaattaaataaaacttctgttagtgaagattgagataggta 860
Query: 661 cataattgtacttccatcaaaggttttccaattcaaaaattttaatcaatactgtccttc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cataattgtacttccatcaaaggttttccaattcaaaaattttaatcaatactgtccttc 920
Query: 721 ctttgnatatttcctc 736
||||| ||||||||||
Sbjct: 921 ctttgtatatttcctc 936
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1136
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1126
Effective search space: 817476
Effective search space used: 817476
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
